Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1490 ATGGCTGAAATTGAAATTCCTCCATATTTTGTATGTCCAATTTCATTTCAAATCATGGAAGAACCTGTGACAACAGTGACAGGAATAACATACGATAGAAAAAGCATTGAAAAATGGTTAATGAAAGCCAAAATTTGTGTATGTCCGGTAACAAATCAATCACTACCAAGAAGTTCAGAATATTTGACTCCAAATCACACACTTCAAAGGCTAATCAAAGCATGGATTTTATCAAATGAAGCCAAAGTGGTTGATAATCAAATTCAATCTCCAAAATCTCCTCTCAATAGAATCCATCTTCAAAAACTTGTCAAGAATCTTGAGCTTCCTAATTGTTTTCAAGCATCAATGGAGAAGATTCTTGAACTTGCTAAACAAAGTGACAGAAATAGAATATGCATGGTTGAAGTAGGTGTAACAAAGGCTATGGTTATGGTGATTAAAAAGAAATTCAAAGAAGGAAATACCAATGGTTTAGAAGAAGCTTTGAAAATTATTCGTCTTTTGTGGAATGAAGCAATGATCAACAACATGATGAAGCCTTTGGTTGGCAAAAACATGGATTTCATGAACTCGTTGACTTGGATTTTGAAAATTTACATTGATACTAACAATTTTGAGATGGTAAATGAAGTTATGCCATTACTAAAGTTGACAATTGATGTTGTGGACTCAAACCTTTTAGGAAATTTAAACATTGAATTCTTTGTAACAATGGTTAGAGTACTTAGAAAGAGAAGATTATTCTCCAAACAAGCTATTAAATCAGCTTTATATGTGCTTATAGAGACGTGCCCGTTGGGTAGAAACCGAACAAAGATCGTGGAAGCGGGTGGAATAACCGAACTCATTGAACTCGAGCTTGAAAAACCGGAGAAGAATGTGACTGAGCTTGTGTTCAATCTTTTGGCACATTTGTGTTCGTGCGCGGATGGAAGAGAACAATTTATGAGGCATGCAGCGGGCATAGCGATGATTTCGAAGAGGATTTTGAGGGTTTCAGCCGCAACCGATGACCTAGCGATTCAAGTACTTTCAGTGATTGCGAAGAATTCAACGTCGAAAGAGTTTGTTTTAGAGATGTTGCAAGTTGGAGCGGTTTCCAAGCTTTGCATGGTAATGCAAGCGGATTGTGCTTCTTATTTGAAAGAGAAAGCAAGAGACATACTTAGGTTACACTCCACTACTTGGAATAATTCTCCATGCATACAATTGTACTTGTTAACAAGGCACCAAAGGTGA 1242 0.3655 MAEIEIPPYFVCPISFQIMEEPVTTVTGITYDRKSIEKWLMKAKICVCPVTNQSLPRSSEYLTPNHTLQRLIKAWILSNEAKVVDNQIQSPKSPLNRIHLQKLVKNLELPNCFQASMEKILELAKQSDRNRICMVEVGVTKAMVMVIKKKFKEGNTNGLEEALKIIRLLWNEAMINNMMKPLVGKNMDFMNSLTWILKIYIDTNNFEMVNEVMPLLKLTIDVVDSNLLGNLNIEFFVTMVRVLRKRRLFSKQAIKSALYVLIETCPLGRNRTKIVEAGGITELIELELEKPEKNVTELVFNLLAHLCSCADGREQFMRHAAGIAMISKRILRVSAATDDLAIQVLSVIAKNSTSKEFVLEMLQVGAVSKLCMVMQADCASYLKEKARDILRLHSTTWNNSPCIQLYLLTRHQR* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1490 413 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Mtr4g1490 413 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Mtr4g1490 413 SUPERFAMILY ARM repeat 113 380 IPR016024 -
Mtr4g1490 413 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 411 - -
Mtr4g1490 413 Gene3D - 238 404 IPR011989 -
Mtr4g1490 413 Pfam U-box domain 6 80 IPR003613 GO:0004842|GO:0016567
Mtr4g1490 413 PANTHER WDSAM1 PROTEIN 1 411 IPR045185 GO:0061630
Mtr4g1490 413 SUPERFAMILY RING/U-box 4 84 - -
Mtr4g1490 413 CDD RING-Ubox_PUB 10 53 IPR045210 -
Mtr4g1490 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 90 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1490 Mtr-Chr4 26387894 26389498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1490 3 410 U-box Gene Family AT3G11840 37.333 3.85e-88 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1490 - - gmx:100811293 555.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1490 4 26387894 26389498 Mtr4g1490 4 26387894 26389498 ECH
Mtr2g2926 2 42841028 42842687 Mtr4g1490 4 26387894 26389498 PCT