LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr4g1478	ATGTCAATGGACATGATTGCAACAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTTAATGTTCCATACAGCAGTTTGTTAACCATAGTAACAGTTAGATGTGGACATTGTGCTAATTTGCTATCAGTTAACATGGTAGCACCATTACTTCAGCCATTTCCTCCTCCTCAACTCCCTCAGCCACAGAAACAGCACATAATTGATGAAGAAGCAAGCAGCAAGGAAATTGGATCATCATCTTCAAAATGCAACAAAATAGCATCATTTGAGGCAGTAGAACATCCTAGGATTCCTCCCATTCGTCCTATAGAGAAAAGACATCGTGTTCCTTCAGCTTACAACCGGTTCATTAAGGAGGAAATTCAAAGGATTAAGGCCAGTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCAGCAGCCAAAAATTGGGCACATTTCCCTCATATTCACTTTGGGAAGCAGCAAGCAAAGTTGGATCATGGTGAAGGGACTCGTGAAAAGACTAATGGATTCTACTGA	540	0.4185	MSMDMIATERVCYVHCNFCNTILAVNVPYSSLLTIVTVRCGHCANLLSVNMVAPLLQPFPPPQLPQPQKQHIIDEEASSKEIGSSSSKCNKIASFEAVEHPRIPPIRPIEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHFGKQQAKLDHGEGTREKTNGFY*	180

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr4g1478	179	Pfam	YABBY protein	8	159	IPR006780	GO:0007275
	Mtr4g1478	179	PANTHER	PROTEIN YABBY 6-RELATED	1	179	IPR006780	GO:0007275
	Mtr4g1478	179	Gene3D	High mobility group box domain	110	164	IPR036910	-
	Mtr4g1478	179	PANTHER	PLANT-SPECIFIC TRANSCRIPTION FACTOR YABBY FAMILY PROTEIN	1	179	-	-
	Mtr4g1478	179	SUPERFAMILY	HMG-box	106	154	IPR036910	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr4g1478	Mtr-Chr4	26164739	26172642	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr4g1478	1	179	C2C2-YABBY Transcription Factor Family	AT1G08465	59.893	1.81e-71	212

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-YABBY	Mtr4g1478		YABBY	3.1e-68	CL0114

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr4g1478	K25796		-	gmx:100500026	253.832

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mtr2g2939	2	43012985	43019418	Mtr4g1478	4	26164739	26172642	PCT