Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1473 ATGAGTGATATAAGAAAATGGTTCATGAAAACACACGATAAGCCCAACAATGCCGCCGCCGGTAACTCCTCCAACAAACCCAAGCCTCCTCCGGCTAAACCCGACCCGGCAAAAACGGTACCTGCTGAAGGTCAAGCAAGTTCAGGCAGAAAGAAAACTAGCAAATATTTTAATACAGATAAGTCAAAGGCGAAAGATGAGGTAGAAACACAAGTGCTACCAGCTAAAAGAAAGACTAATGAAGATGATGGAGATGACTCTGTTCTTCCCACTAATCAAAAGAAGGTAGCTGGTTCCACTCCTACTAAAAAATTGAAGAGTGGATCAGGTAGGGGAATCCCCCAGAAATCTGTAGATTTGGACGAAAGTGATGAAGAGGATGTTAAAGATGCTGTGACTCCTATTAAATCTGGTGGAAGGGGTCGTGGTGGAAGAGGAGCATCAACACCAGCATCTGGTGGAAGGGGCCGAGGGGGTGTAAGGGGAACTGCCCAGAAATCTGTAGCTATGGAAGAAAATGACGAAGATGACGAGAAAGATGTTGCTTCTGCTGCCAAATCTGGTGGAAGGGGTCGGGGTGGAAGAGGAGCCTCAGCACAACCATCTGGTGGAAGGGGCCGAGGGGGTGGTGGTAGGGGTGGATTCATGAATTTCGGTGAAAGAAAAGATCCTCCACACAAGGGAGAAAAGGAAGTCCCTGAAGGTGCTCCTAACTGTTTAGCTGGTTTAACGTTTGTAATCAGTGGAACACTGGACAGTTTGGAACGAGAAGAAGCGGAAGATTTGATCAAACGCCATGGTGGCCGTGTCACCGGATCAGTCAGCAAGAAAACAAACTATTTGTTATGTGACGATGATATTGGGGGAAGAAAGTCTGAAAAAGCTAAAGAGCTAGGAACTTCATTCCTCACAGAAGATGGATTGTTCGACATGATTCGGGCATCTAAACCTGCAAAAGCTCCTAAGCAAGAGGAATGCAAGAAATCTGTGACTAAGGCTGTTCCAGTGCCATCTCCATCAAAAGTTCTCCCGAAAGCAGAAACAAAGGCCTCTTTGCCTTCATACTCACCTTCCAACCAAGCCAAGCCTAAGAAAGCTGCTACTGCTCAGTCTAATTTGATGTGGACAGAGAAACATCGACCTAAAAATCCCAAAGATATCATAGGGAATCAGTCATTGGTTGCACAGCTTCGAACTTGGTTGAAAGGTTGGCACGAGCAATTTTCTAACACTGGTGGTAATAAAAAAGGAAAAAAGCAGAATGACCCTGCTTCTAAAAAGGCTGTCTTGTTAAGTGGAACCCCTGGTATAGGCAAAACAACTTCAGCAAAGCTGGTGTGTCAGGAGCTTGGTTTCCAAGCCATAGAGGTAAATGCTAGTGATAGCCGTGGAAAAGCTGACAGCAAAATTGAAAAAGGAATTAGTGGAAGCAATGCAAATTCTATCAAGGAACTTGTGACCAACGAGGCCCTTGGTCGTAATATGGATAGGTCAAAACAGTCCAAAACTGTGCTCATTATGGATGAGGTTGATGGGATGTCAGCTGGTGATAGGGGTGGTGTTGCTGATCTTATTGCTAGCATCAAGATATCAAAAATTCCTATTATCTGCATTTGTAATGACCGTTACAGTCAGAAACTGAAGAGCCTAATGAACTACTGTTTGCTTCTTAGTTACCGGAAGCCTACAAAGCAACAGATGGCAAAGAAGTTTATGGAGGTTGCTAAGGCTGAAGGGCTTCAAGTTAATGAGATTGCTCTTGAGGAATTAGCAGAAAGAGTTAATGGGGATATGCGCATGGCACTAAACCAGTTACAATATATGGGCCTCTCCATGTCAGTTATCAACTACGATGATATTAGGCAGCGGTTACTTACCAATGCGAAAGATGAAGACATTTCACCATTCACAGCTGTTGATAAGCTTTTTGGTTTTAATGCTGGAAAGATGAAAATGGATGAGAGGATTAATCTTAGCATGAGTGACCCTGATCTTGTTCCTCTACTTATCCAGGAAAATTATATTAATTATAGACCAAGCTCGGCCGGTAAGGATGACAATGGTCTAAAGCGCATGAATCTGATTGCCCGTGCTGCCGAGTCTATTGCTACTGGAGATATAGTGAGCGTACAGATTCGCAGATATCGACAGTGGCAGCTCTCTCAAACTAGTTCTGTTGCATCATGTATACTTCCTGCTTCATTGCTACATGGGAGTAGGGAAATACTTGAACAGGGAGAACGGAATTTCAACCGATTTGGTGGGTGGCTGGGGAAGAACTCGACAATGGGCAAAAACATGAGGCTTATGGATGACCTGCATGTTCACATTCTTGCATCTCGCGAATCTAGTTCGGGAAGGGATACTATTCGCCTGGAATACCTTACTACTCTTCTTAAGAACTTGACAGAACCCCTCCGAGTTTTGCCTAAGGCTGAAGCTGTTGAGAAAGTTGTGGAATTTATGAACACGTATTCAATCAGTCAGGAAGATTTTGACACTATAGTAGAGTTATCGAAATTCAAGGGTCGTCCTAATCCGCTAGATGGCATACAGCCTGCCGTTAAGTCAGCCTTGACAAAAGCATACAAAGAGCTAAGCAAAACTCGGACTGTTAGAGCTGCGGATCTAATTACTCTTCCTGGAATAAAAAAGGCACCCAAGAAGCGGATTGCTGCTATTTTAGAACCAGCTGATGAAGGAGTGGAACAGGGTGATGGTGGCAACACTTTGGATGAGAGTGAAGAAGAGAACACCTCTGATGTAGATGAGTCAGGTGCCGCAACTGGCGAGAAGCTGAAGTCAGAACTTCAAAGTTTGAATTCAAAGGGCGTGCAAGTACAATTGGAATTGAAGGGATCGGGAAGCTCCAAGAAGGTATCTGGTGGTAGAGGTAAAGGTGCTTCTGCATCTGCGCAGAAGGGTGCTCAAACGTCAAAGACTCCTGCAAAAAGAAAAAGGTGA 2964 0.4433 MSDIRKWFMKTHDKPNNAAAGNSSNKPKPPPAKPDPAKTVPAEGQASSGRKKTSKYFNTDKSKAKDEVETQVLPAKRKTNEDDGDDSVLPTNQKKVAGSTPTKKLKSGSGRGIPQKSVDLDESDEEDVKDAVTPIKSGGRGRGGRGASTPASGGRGRGGVRGTAQKSVAMEENDEDDEKDVASAAKSGGRGRGGRGASAQPSGGRGRGGGGRGGFMNFGERKDPPHKGEKEVPEGAPNCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDDDIGGRKSEKAKELGTSFLTEDGLFDMIRASKPAKAPKQEECKKSVTKAVPVPSPSKVLPKAETKASLPSYSPSNQAKPKKAATAQSNLMWTEKHRPKNPKDIIGNQSLVAQLRTWLKGWHEQFSNTGGNKKGKKQNDPASKKAVLLSGTPGIGKTTSAKLVCQELGFQAIEVNASDSRGKADSKIEKGISGSNANSIKELVTNEALGRNMDRSKQSKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLMNYCLLLSYRKPTKQQMAKKFMEVAKAEGLQVNEIALEELAERVNGDMRMALNQLQYMGLSMSVINYDDIRQRLLTNAKDEDISPFTAVDKLFGFNAGKMKMDERINLSMSDPDLVPLLIQENYINYRPSSAGKDDNGLKRMNLIARAAESIATGDIVSVQIRRYRQWQLSQTSSVASCILPASLLHGSREILEQGERNFNRFGGWLGKNSTMGKNMRLMDDLHVHILASRESSSGRDTIRLEYLTTLLKNLTEPLRVLPKAEAVEKVVEFMNTYSISQEDFDTIVELSKFKGRPNPLDGIQPAVKSALTKAYKELSKTRTVRAADLITLPGIKKAPKKRIAAILEPADEGVEQGDGGNTLDESEEENTSDVDESGAATGEKLKSELQSLNSKGVQVQLELKGSGSSKKVSGGRGKGASASAQKGAQTSKTPAKRKR* 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1473 987 MobiDBLite consensus disorder prediction 932 955 - -
Mtr4g1473 987 SMART AAA_5 425 563 IPR003593 -
Mtr4g1473 987 MobiDBLite consensus disorder prediction 895 987 - -
Mtr4g1473 987 CDD HLD_clamp_RFC 562 620 - -
Mtr4g1473 987 ProSiteProfiles BRCT domain profile. 235 316 IPR001357 -
Mtr4g1473 987 Pfam Replication factor RFC1 C terminal domain 702 864 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Mtr4g1473 987 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 373 622 IPR027417 -
Mtr4g1473 987 Pfam ATPase family associated with various cellular activities (AAA) 429 529 IPR003959 GO:0005524|GO:0016887
Mtr4g1473 987 PANTHER REPLICATION FACTOR C SUBUNIT 1 11 960 - -
Mtr4g1473 987 Gene3D - 562 632 - -
Mtr4g1473 987 CDD BRCT_RFC1 235 313 - -
Mtr4g1473 987 MobiDBLite consensus disorder prediction 92 106 - -
Mtr4g1473 987 SUPERFAMILY post-AAA+ oligomerization domain-like 633 778 IPR008921 GO:0003677|GO:0006260
Mtr4g1473 987 MobiDBLite consensus disorder prediction 219 233 - -
Mtr4g1473 987 Gene3D BRCT domain 212 314 IPR036420 -
Mtr4g1473 987 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 11 960 - -
Mtr4g1473 987 SMART BRCT_7 237 315 IPR001357 -
Mtr4g1473 987 MobiDBLite consensus disorder prediction 54 89 - -
Mtr4g1473 987 PIRSF RFC1 1 963 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Mtr4g1473 987 CDD AAA 424 525 - -
Mtr4g1473 987 Gene3D - 634 743 - -
Mtr4g1473 987 SUPERFAMILY BRCT domain 235 316 IPR036420 -
Mtr4g1473 987 MobiDBLite consensus disorder prediction 1 236 - -
Mtr4g1473 987 Pfam BRCA1 C Terminus (BRCT) domain 237 312 IPR001357 -
Mtr4g1473 987 Gene3D - 373 561 IPR027417 -
Mtr4g1473 987 MobiDBLite consensus disorder prediction 351 369 - -
Mtr4g1473 987 MobiDBLite consensus disorder prediction 316 369 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1473 1 944 Core DNA Replication Machinery Family AT5G22010 63.114 0.0 1065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1473 K10754 - gmx:100790070 1352.42