Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1461 ATGGCAGAAGAACCTTCACAACCTCCCTCCGCTGTAGAAAGCCTATCGTTCGAAGCATTAATTATCGATGAGAACAAAAGTTCTCCCAACTTGCCCGGCGGTCCTAATGACTCTAATATTGAAACGGAGGTTAACTCGGGGTACTCTCCTTACACATCTGCCGCAACATTCGAAGAGCTTTCCCTCTCTCCGGAGCTACTGAAGGGACTCTATGTGGAGATGGGGTTTATAAAGCCTAGCAAAATTCAAGAAATAACCTTGCCGATGATTCTTAACCCTCCACATAAGGATTTGATTGCACAGGCACGTAATGGTTCTGGTAAAACCACTTGTTTTGTCCTCGGAATGCTCAGTCGTGTTGATCCAAACATGAAGGCTCCTCAAGCTCTCTGCATATGCCCTACTAGAGAGTTAGCTATTCAGAACAATGAGGTTCTCCAAAAGATGGGAAAGTACACGGGCATTAGTTCGGAACTTGCAATTCCTAGCATGGACAAAATTCCACCATCAAGACGGCCACCTATTATGGCTCAGGTGGTTATTGGTACTCCTGGCACAATTAATAGCTTGAAGAATCATAAGAAACTCGGGGTGACGAGGTTAAAGATTCTCGTTTTTGACGAGGCTGACCAAATGCTTGCTCAGGATGGGTTTAAAGATGATTCTCTAAGGATAATAAAAGAAGACTTAGGTTAAAATGATATGGGTAAGATGATGGTGACCAAGGATTGGCTTGTGTTTCTTCAGGTTCTTTTGTTTTCTGCTACATTTGATGACACTGTCAAGAACTTCGCTACAAGGATTGTTGCGAAGAAGGAGCATAATGAATATTTTGTGAAGAAAGAGGAGCTATCTTTAGAAGCAGTGAAGCAGTACAAAGTGAAATGTACCGATGAACTCGCTAAGATTGAAGTGATTAAAGATTATATATTCGAATTAGGAGAGAATGTGGGGCAAACTATTATATTTGTGCGCACTAGAAACAGTGCAAAAATGTTGCACAAATCTCTTGTTGATTTTGGCTATGAGGTTACTTCCATACAAGGTGCTCTTCAAACTGAAGAGAGAGACACAATCATCAAGGAATTCAAAGATGGTTTGACTCAAGTTCTTATCTCAACCGACGTTCTTTCCCGTGGCTTTGATCAGGATCAGGTCAATTTGGTTATCAACTATGATCTTCCCCTCAAGTACACTCGTGGCCAAGAACCGGAGCCTGATTGTGAGGTCTATTTGCACAGGGTTGGAAGGGCTGGGAGATTTGGGCGCAAGGGGGCTGTATTTAACTTGATATGCCATGAAAGTGAGCAAATGGTCATGTCAAAGATTGAAGAACATTTTGGCATCCATGTAGAAGAGGTGCGAGAAAAAAGTGTTGGAGACTATAAAAATGCTCTTAAGAAAGCTGGTTTACTTTACTGA 1422 0.4198 MAEEPSQPPSAVESLSFEALIIDENKSSPNLPGGPNDSNIETEVNSGYSPYTSAATFEELSLSPELLKGLYVEMGFIKPSKIQEITLPMILNPPHKDLIAQARNGSGKTTCFVLGMLSRVDPNMKAPQALCICPTRELAIQNNEVLQKMGKYTGISSELAIPSMDKIPPSRRPPIMAQVVIGTPGTINSLKNHKKLGVTRLKILVFDEADQMLAQDGFKDDSLRIIKEDLG*NDMGKMMVTKDWLVFLQVLLFSATFDDTVKNFATRIVAKKEHNEYFVKKEELSLEAVKQYKVKCTDELAKIEVIKDYIFELGENVGQTIIFVRTRNSAKMLHKSLVDFGYEVTSIQGALQTEERDTIIKEFKDGLTQVLISTDVLSRGFDQDQVNLVINYDLPLKYTRGQEPEPDCEVYLHRVGRAGRFGRKGAVFNLICHESEQMVMSKIEEHFGIHVEEVREKSVGDYKNALKKAGLLY* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1461 472 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 36 451 - -
Mtr4g1461 472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 127 440 IPR027417 -
Mtr4g1461 472 SMART ultradead3 75 291 IPR014001 -
Mtr4g1461 472 CDD DEADc_DDX19_DDX25 62 268 - -
Mtr4g1461 472 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 89 274 IPR014001 -
Mtr4g1461 472 SMART helicmild6 330 421 IPR001650 -
Mtr4g1461 472 Gene3D - 35 279 IPR027417 -
Mtr4g1461 472 Pfam Helicase conserved C-terminal domain 301 421 IPR001650 -
Mtr4g1461 472 Gene3D - 280 469 IPR027417 -
Mtr4g1461 472 MobiDBLite consensus disorder prediction 25 45 - -
Mtr4g1461 472 Pfam DEAD/DEAH box helicase 81 262 IPR011545 GO:0003676|GO:0005524
Mtr4g1461 472 PANTHER DEAD-BOX HELICASE DBP80 36 451 - -
Mtr4g1461 472 CDD SF2_C_DEAD 288 430 - -
Mtr4g1461 472 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 304 462 IPR001650 -
Mtr4g1461 472 MobiDBLite consensus disorder prediction 29 45 - -
Mtr4g1461 472 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 55 84 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1461 Mtr-Chr4 25976780 25981121 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1461 48 453 Eukaryotic Initiation Factors Gene Family AT1G72730 35.381 4.95e-69 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1461 K18655 - gmx:100778091 607.446