Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1458 ATGGCTTCAGTTCCAGTTAATAACAACTCTTTCCCTGAAGATACTAACAACCTTGAGTTGAAACTTAGTCCCAACAAAAACATGGATGCTACACATAGTACTATCCCTTTCCTAGTCAACATAAGGTCCTCCAATGAAAATCAAAACTCTCCAATCTCATCTCATGAAACAAAAATAGAGTTTGATTTCTTTAAGGACAACAACAATGACCATCAAGTTGTCTCTGCCTCTGTCACTGACAATGATCATATTCATACTGATACATCATCTTTGTTGGAACTCAAGTTGAGTCTTGGTCCCAATCCTATTACTACCAATACTAGTAGTGATCAATCTATGATGGATGATGGCATGTCACCCAATTCAAAAGAGAAGAGAACTAAGAGTACGGAGATGGCTATTCTTCAAGGAGAGCTTGAAGAAGCAAAAATGGAGAATTGTAGATTAAAATTGATGTATGATCTGCTTAGAACAGATTACAATTACATGCGAGGGCGTTTCGAGAGAATGATGCAAGACCATAGGGGTAAGAAACTTAAAGGAAAAGAAGTCTTTGATGGAAAATTTAAAGAGAAAACGAGAACTGAGAATGGTGGAGTGCTGGGGCCAAGGAAATTTATGGATCTTGGATCGACTACTAATAAGGTTAAGGAAGTTAAAGTACAAGAAGTTTTTGATCGACAATTTGGAGAGAATATGAGAATTAAGAATGGTGGAGAATTAATGAAAAGGAAATTTGATGATGCTGGATTGGCTACTAATAAGGTTAAGGAAGTTAAAGGAAAAGAAGTGTTTAATGGAAAATGTGAAAAGAAAAAGAGACTTGAGAATGGTGGAGAGTTGGTTCCAAGGAAATGTAAGGATCTTGTGTTGATTACTAATGTTGAGACTGCGATGGATCACGAAGCTTCTTCCTCGTCAATGAGAAAACCTAGAAGTCAGGCGATAAAAAGCATCGATTTTGCTTCAAATGAGATAGTACTAAGTAAGAATGAGGATGCTAATGTTGATAATGTTGAGGATTCATTGACAAAAGCAAGAGTTTGTATTAAAGCTAGATCAGAAGAAACCATGATCACTGATGGAAGTCAATGGAGAAAGTATGGGCAAAAACTACCGAAAGGAAACTCGTGTCCTAAAGCTTATTATCGCTGCAGCACAGCCCATGGATGCCCAGTCCGAAAGCATGTACAAAGGTGTGCTCTTGACAAAACAGTTGTCATGACAACATATGAAGGAAATCACAACCACCCTTTACCTGCAGCAGCCAAAGAAATGGCAAAAACAACTTCAGCAGCTGCAAAGATGCTTCTTTCAGCATCAACATCAAGCAATGATGGACAATTGAATGCAAATTTACTCACAAGAACACTCCTTCCTTGTTCTTCAAGGATTGCAACTATCTCAGCTTCTGCTCCATATTCAACTATTACAATTGATTATACTCAATCTCCAAATACTCCACAGAGGAACCCAGATCAGTTTCAAACTCCTTTAATCCCTCAGAGTTCTGCAAATTCCTCAGCTTCTCTGATCTGCCAAATACCTAATCAAAACCAATCAAAATTTTCTAGACTACATATGTCGAAAGATGCAGCTGACCCTTCACAACTCTTGGCAATACCAAATATTACTGCTCAGACAGTTAATGCTGCCATTGCTGCTGTTACTTCCATTATTGGTGATACTCAGCCAAACAACAACATTGTTGTTGCTGATAATAATAATTGCAACAATGTCAACGAAGGAAATAGCAATGGTAGCAACAATAATGTCACAGAAGCCAAGTGCAACAGAAACATCACATTTGGAAACAACAATGATGGGAAGGAATAA 1836 0.378 MASVPVNNNSFPEDTNNLELKLSPNKNMDATHSTIPFLVNIRSSNENQNSPISSHETKIEFDFFKDNNNDHQVVSASVTDNDHIHTDTSSLLELKLSLGPNPITTNTSSDQSMMDDGMSPNSKEKRTKSTEMAILQGELEEAKMENCRLKLMYDLLRTDYNYMRGRFERMMQDHRGKKLKGKEVFDGKFKEKTRTENGGVLGPRKFMDLGSTTNKVKEVKVQEVFDRQFGENMRIKNGGELMKRKFDDAGLATNKVKEVKGKEVFNGKCEKKKRLENGGELVPRKCKDLVLITNVETAMDHEASSSSMRKPRSQAIKSIDFASNEIVLSKNEDANVDNVEDSLTKARVCIKARSEETMITDGSQWRKYGQKLPKGNSCPKAYYRCSTAHGCPVRKHVQRCALDKTVVMTTYEGNHNHPLPAAAKEMAKTTSAAAKMLLSASTSSNDGQLNANLLTRTLLPCSSRIATISASAPYSTITIDYTQSPNTPQRNPDQFQTPLIPQSSANSSASLICQIPNQNQSKFSRLHMSKDAADPSQLLAIPNITAQTVNAAIAAVTSIIGDTQPNNNIVVADNNNCNNVNEGNSNGSNNNVTEAKCNRNITFGNNNDGKE* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1458 611 SUPERFAMILY WRKY DNA-binding domain 353 420 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr4g1458 611 Gene3D WRKY domain 344 421 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr4g1458 611 ProSiteProfiles WRKY domain profile. 354 420 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr4g1458 611 MobiDBLite consensus disorder prediction 101 128 - -
Mtr4g1458 611 Pfam WRKY DNA -binding domain 361 418 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr4g1458 611 MobiDBLite consensus disorder prediction 101 118 - -
Mtr4g1458 611 PANTHER OS05G0567200 PROTEIN 32 586 - -
Mtr4g1458 611 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 32 586 IPR044810 GO:0003700
Mtr4g1458 611 SMART WRKY_cls 359 419 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr4g1458 611 Coils Coil 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1458 Mtr-Chr4 25899531 25903066 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1458 113 558 WRKY Transcription Factor Family AT4G04450 39.693 2.52e-71 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Mtr4g1458 WRKY 6.2e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1458 - - mtr:MTR_4g049790 1053.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1458 4 25899531 25903066 Mtr4g1458 4 25899531 25903066 ECH
Mtr4g1458 4 25899531 25903066 Mtr2g0842 2 8526807 8529598 ECH
Mtr4g1458 4 25899531 25903066 Mtr4g4940 4 63541489 63543915 ECH