Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1451 ATGGCTGTTGTTCTTAATTGCATGATTTCTCTTGTAATATTTTCTTCTCTTATGTTAAACCCTTGTTATTGCCTCAACCGTAAATTGTTTAAAAATGTTTCTGAAATTCAAAATGATAATGATCAATGGCAAACGGCAATAGCTACATGGTATGGAGCCCCAAATGGTGCTGGATCGGATGGGGGTGCATGTGGATATGTTGAAAGTGTAGAGAATCCTCCACTTTCTAAAATGATATCAGCTGGAGGTCCATCTATTTTCCTTGGCGGGAGAGGATGTGGTGCTTGTTATCAGGTGAAATGCACCGAAAATAGTGCATGCTCAGGAAGTCCAGTGAATGTGGTGATAACAGATAATTGCCCCGAATGTGAATCTGCCCATTTTGATTTAAGTGGAACTGCCTTTGGTTCCCTTGCAAATCCAAACCAAGCTGATAATCTTCGCAATGCTGGGAAAATTAACATTCGGTACACAAGGGTTGCATGCTCTTTTGGAAATTCAATAGTCTTCACAATTGATAATGGAGCCAACCCATACTGTTTTGCAACAGAAATAGAATATGAAAATGGAAATGGTGACCTAGTTCAAGTTGAATTGAGCCAATCAAACACATGGCATCCAATGTTTCGTTCTTGGGGTTCAAGATGGGCTTTTAACACAGGTTCACCATTACAAACTCCATTTTCCATTAAGCTTGTTGAGACATTGAGATTTCAGATTGGAAATGGAAATGGAAGTAACAACACCATTATAGCAGAGAATGTTATTCCACAAAATTGGCAACCTGGCCAAGTTTATCGTTCACTTGTTAATTTCTAG 819 0.3895 MAVVLNCMISLVIFSSLMLNPCYCLNRKLFKNVSEIQNDNDQWQTAIATWYGAPNGAGSDGGACGYVESVENPPLSKMISAGGPSIFLGGRGCGACYQVKCTENSACSGSPVNVVITDNCPECESAHFDLSGTAFGSLANPNQADNLRNAGKINIRYTRVACSFGNSIVFTIDNGANPYCFATEIEYENGNGDLVQVELSQSNTWHPMFRSWGSRWAFNTGSPLQTPFSIKLVETLRFQIGNGNGSNNTIIAENVIPQNWQPGQVYRSLVNF* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1451 272 SUPERFAMILY PHL pollen allergen 167 268 IPR036749 -
Mtr4g1451 272 Gene3D - 27 163 IPR036908 -
Mtr4g1451 272 PRINTS Expansin/Lol pI family signature 42 57 IPR007118 GO:0005576
Mtr4g1451 272 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Mtr4g1451 272 PRINTS Expansin/Lol pI family signature 83 101 IPR007118 GO:0005576
Mtr4g1451 272 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576
Mtr4g1451 272 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576
Mtr4g1451 272 Gene3D - 164 272 IPR036749 -
Mtr4g1451 272 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 61 167 IPR007112 -
Mtr4g1451 272 PANTHER EXPANSIN-B3 2 272 - -
Mtr4g1451 272 SMART dpbb_1 79 157 IPR007112 -
Mtr4g1451 272 PANTHER EXPANSIN-LIKE PROTEIN B1 2 272 - -
Mtr4g1451 272 Pfam Lytic transglycolase 80 157 IPR009009 -
Mtr4g1451 272 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 268 IPR007117 -
Mtr4g1451 272 Pfam Expansin C-terminal domain 168 257 IPR007117 -
Mtr4g1451 272 PRINTS Major pollen allergen Lol pI signature 81 92 IPR005795 GO:0005576|GO:0019953
Mtr4g1451 272 PRINTS Major pollen allergen Lol pI signature 101 111 IPR005795 GO:0005576|GO:0019953
Mtr4g1451 272 PRINTS Major pollen allergen Lol pI signature 139 154 IPR005795 GO:0005576|GO:0019953
Mtr4g1451 272 PRINTS Major pollen allergen Lol pI signature 170 185 IPR005795 GO:0005576|GO:0019953
Mtr4g1451 272 PRINTS Major pollen allergen Lol pI signature 186 201 IPR005795 GO:0005576|GO:0019953
Mtr4g1451 272 PRINTS Major pollen allergen Lol pI signature 244 261 IPR005795 GO:0005576|GO:0019953
Mtr4g1451 272 SUPERFAMILY Barwin-like endoglucanases 40 164 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1451 Mtr-Chr4 25801374 25808560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1451 20 272 Expansin Gene Family AT1G65680 49.807 1.29e-86 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1451 - - gmx:100786475 375.17