Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1447 ATGGAACTTCGTTCTCGTCGACAACGCGCTTCCGATGAAATCGATTCCGTGACTGATAAGGGGAAGCAGCCGATGGAGGATATTGATGAAAAGTTTGACTTTAATACAGATGAAGATGATCATGTCGCGTCTGTGAAATGCGATTCTGATTATGAAGCTGAAGAGATTGGTGGACAGCTCCCCTTTGACTTGAATCGAGATCCGACTATAATCATTAGTGATTCTGATGGAGAAGATAATACTTCTGATTCATCTGACTTTAGCGGGCCTTCATCTAAACGGAGAAAGACACGGTCCAGAAAGAGAGGTAGTAAATCCAAGATAGAATCTGCAGACCTGAGTGGTGTAGAGAGTGCGCTGGAGTTCGACCTGAGTGGTGTAGAGAGAGCGCTGGAGTTCGATCAAAGTTGTGTAGAGAGAGCGCTGGAGTTCGACCTGAGTGGTGTAGAGAGAGCGCTGCTGGAGTTTGATGATGAGTTATTTCCAATGGTTTCTGCTGAAGAGGCTCCATTTGATTTACCTTTACCTAAGCTGCCAAGGAAGAAAAAAGCAAAGAAGACAAAAAAGGGAGATCCTAAACCAGTGTTGTTATGGCATGCTTGGAAACAGGAACATGAGAAGTGGATCGATCAGAATTTGCTGGAAGATGTTACCCTCGATCAGAGTGAAGTGATGAATGAGACGGCCGAGGCATCGTCAGATCTGATTGTTCCGTTGCTGAGGTACCAAAGGGAATGGTTAGCATGGGCTTTGAAGCAGGAGGAATCTGTAACCAGAGGAGGAATCCTTGCTGATGAAATGGGTATGGGGAAAACTATTCAAGCAATTGCCCTTGTCCTTTCTAAACGGGAATTGCAACAAATGTGCTGTGAACCATTTGAACACTCAGATTCACCCGGGTCATCTAAAGTCCTTCCTGTGATCAAAGGAACTCTTGTCATCTGTCCCGTGGTTGCCGTCACTCAATGGGTTAGTGAGATTGCTCGATTTACTTTGAAAGGAAGCACGAAGGTTCTGGTTTATCATGGGCCAAAGAGATGGAAGAGTGCTGACAAGTTCTCGGAATATGATTTTGTAATAACAACATATTCTACTGTGGAATCGGAGTACAGAAAGCATGTGATGCCTCCTAAGGAAAAGTGCCAATATTGTGGAAGATTATTTCACCCGCCTAGTTTAGTTTTTCACCAGAAGTACTATTGTGGGCCTGATGCTATTAGAACAACAAAACAAGCAAAGCAAACCAAGAAAAAGAAAAGAGGTCAGAGTTCAAAGTTGGATGGAGAGTTGGAACAGGGCTCTATCAAAAAGAAGGAAGAGGATCTAGAAGGCAATGACAAGTCATTTCTCCATGCTGTGAAGTGGCAAAGGATCATATTGGATGAGGCACATTTTATAAAATCTAGGCATTCTAACACTGCAAAAGCAGTTCTTGCCTTAGAGTCTTTCTACAAATGGGCATTAAGTGGTACACCCCTTCAGAATCGTGTTGGAGAGCTATACTCTTTGGTACGATTTCTACAGATAGTTCCCTATTCCTATAACCTGTGCAAGGACTGTGATTGCAGGACACTTGATCATAGCTCCTCTAAAGTATGTTCAAACTGCTCCCACAGTTCTGTTAGGCATTTTTGTTGGTGGAACAAGAATATTGCCACACCAATTCAATCATCCGGCTATGGTGATGATGGGAAAAGAGCTATGATTTTGCTCAAAAACAAACTTTTAAAGAGCATAGTCTTAAGGCGAACTAAAATAGGCAGGGCTGCTGATCTTGCACTTCCGCCTAGGATCGTTTCATTGAGGAGGGATAGCCTGGATATAAAAGAGCAAGACTATTATGAATCACTATACAATGAAAGTCAGGCACAATTTAATACGTATGTCGAGGAAAATACTCTGACAAATAATTATGCTCATATTTTTGACCTCCTCACACGACTACGTCAGGCTGTGGATCATCCATATCTTGTAGTGTATTCTCCAACTGCAGCAGCACGGCAAGGTGGGAACTTGGCTAGTAATGGTGATGTTGAACAAGAATGTGGCATTTGTCATGATACTGTTGAAGATCCAGTTGTTACTTCTTGTGAGCATACTTTTTGCAAGGGATGCTTGATAGATTTCTCTGCTTCCTTAGGACAAATATCATGCCCCTCATGCTCTAAATTACTCACTGTTGATTTGACTTCCAACAAGGATGCAGTGGTTGATAAAACAACAACAATTAAGGGTTTCAGATCTTCAAGCATTTTAAACAGGATTCAGATTGAGAATTTTCAGACAAGTACTAAAATAGAGGCATTGAGAGAAGAAATTAGATTTATGGTTGAAAGGGATGGTTCTGCAAAGGCGATTGTTTTTAGCCAGTTCACATCATTCTTGGATCTCATCAACTACTCCCTGCAGAAGTCAGGTGTATCTTGCGTTCAATTGGTTGGAAGTATGACATTGACTGCTCGGGATAATGCCATTAAGAAATTTACTGATGATCCAGACTGCAAAATTTTTCTCATGAGCTTGAAAGCCGGAGGCGTTGCTCTGAATTTGACTGTAGCATCTCATGTTTTCCTCATGGATCCTTGGTGGAACCCTGCAGTGGAGCGTCAGGCTCAAGACAGAATTCACCGGATAGGGCAGTACAAACCAATCAGAATTGTGAGATTTGTCATTGAAAACACAATCGAGGAGAGGATTTTGAAACTTCAAGAGAAGAAGGAACTGGTATTTGAAGGGACTGTAGGCGGTTCTTCAGAAGCCCTAGGGAAGTTGACGGTGGCCGACTTGAAATTTCTCTTTGTTACTTAA 2808 0.4227 MELRSRRQRASDEIDSVTDKGKQPMEDIDEKFDFNTDEDDHVASVKCDSDYEAEEIGGQLPFDLNRDPTIIISDSDGEDNTSDSSDFSGPSSKRRKTRSRKRGSKSKIESADLSGVESALEFDLSGVERALEFDQSCVERALEFDLSGVERALLEFDDELFPMVSAEEAPFDLPLPKLPRKKKAKKTKKGDPKPVLLWHAWKQEHEKWIDQNLLEDVTLDQSEVMNETAEASSDLIVPLLRYQREWLAWALKQEESVTRGGILADEMGMGKTIQAIALVLSKRELQQMCCEPFEHSDSPGSSKVLPVIKGTLVICPVVAVTQWVSEIARFTLKGSTKVLVYHGPKRWKSADKFSEYDFVITTYSTVESEYRKHVMPPKEKCQYCGRLFHPPSLVFHQKYYCGPDAIRTTKQAKQTKKKKRGQSSKLDGELEQGSIKKKEEDLEGNDKSFLHAVKWQRIILDEAHFIKSRHSNTAKAVLALESFYKWALSGTPLQNRVGELYSLVRFLQIVPYSYNLCKDCDCRTLDHSSSKVCSNCSHSSVRHFCWWNKNIATPIQSSGYGDDGKRAMILLKNKLLKSIVLRRTKIGRAADLALPPRIVSLRRDSLDIKEQDYYESLYNESQAQFNTYVEENTLTNNYAHIFDLLTRLRQAVDHPYLVVYSPTAAARQGGNLASNGDVEQECGICHDTVEDPVVTSCEHTFCKGCLIDFSASLGQISCPSCSKLLTVDLTSNKDAVVDKTTTIKGFRSSSILNRIQIENFQTSTKIEALREEIRFMVERDGSAKAIVFSQFTSFLDLINYSLQKSGVSCVQLVGSMTLTARDNAIKKFTDDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTVGGSSEALGKLTVADLKFLFVT* 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1447 935 Gene3D - 599 930 IPR027417 -
Mtr4g1447 935 Pfam Helicase conserved C-terminal domain 765 879 IPR001650 -
Mtr4g1447 935 Gene3D - 390 598 IPR038718 -
Mtr4g1447 935 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 675 746 IPR013083 -
Mtr4g1447 935 ProSiteProfiles Zinc finger RING-type profile. 682 722 IPR001841 -
Mtr4g1447 935 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 761 925 IPR001650 -
Mtr4g1447 935 CDD SF2_C_SNF 763 890 - -
Mtr4g1447 935 CDD DEXDc_SHPRH-like 239 583 - -
Mtr4g1447 935 Gene3D - 241 384 IPR038718 -
Mtr4g1447 935 SMART helicmild6 796 879 IPR001650 -
Mtr4g1447 935 SMART ultradead3 235 528 IPR014001 -
Mtr4g1447 935 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 454 933 IPR027417 -
Mtr4g1447 935 SMART ring_2 682 721 IPR001841 -
Mtr4g1447 935 Pfam Zinc finger, C3HC4 type (RING finger) 681 721 - -
Mtr4g1447 935 MobiDBLite consensus disorder prediction 1 110 - -
Mtr4g1447 935 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 181 424 - -
Mtr4g1447 935 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 445 770 - -
Mtr4g1447 935 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 772 932 - -
Mtr4g1447 935 MobiDBLite consensus disorder prediction 74 88 - -
Mtr4g1447 935 ProSitePatterns Zinc finger RING-type signature. 697 706 IPR017907 -
Mtr4g1447 935 SUPERFAMILY RING/U-box 679 726 - -
Mtr4g1447 935 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 252 510 IPR014001 -
Mtr4g1447 935 Coils Coil 752 772 - -
Mtr4g1447 935 PANTHER - 445 770 - -
Mtr4g1447 935 PANTHER - 772 932 - -
Mtr4g1447 935 PANTHER - 181 424 - -
Mtr4g1447 935 Pfam SNF2-related domain 254 658 IPR000330 GO:0005524|GO:0140658
Mtr4g1447 935 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 228 583 IPR027417 -
Mtr4g1447 935 MobiDBLite consensus disorder prediction 1 53 - -
Mtr4g1447 935 MobiDBLite consensus disorder prediction 411 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1447 Mtr-Chr4 25768985 25777694 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1447 172 935 RAD5 or RAD16-like Gene Family AT1G05120 65.990 0.0 1059
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mtr4g1447 SNF2_N 5e-48 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1447 K15083 - gmx:100798333 1197.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1447 4 25768985 25777694 Mtr4g1447 4 25768985 25777694 ECH