Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1420 ATGGCGATACATTTATACAAAACTTCTATCCCGAGCACCCGCACACGAAATCGTTTGATTTATGGACAGCATCATTGTGGTAAAGGCCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATTGATTTTCGACGTAATGAAAAAGACATATATGGTCGAATCGTAACTATCGAATACGACCCTAATAGAAATGCACACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACACCCCAGAGGGGCTATAATTGGAGATACCATTGTTTATGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATAACACTTGGAAAGGGTGGACAATTAGCTAGAGCGGCTGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCAACATTAAAATTACCTTCTGGAGAGGTCCGTTTGATATCAAAAAACTGCTCAGCAACAGTAGGACAAGTAGGGATCCTGGTGTCAACGGATCCTCTGAAGGTGGGAGCGGTGGGTTTCCGACTGGGAACAGATGGTGGAGGGTGGCGACGGCGTGCTTTGTGCCGGCGAAGGTTGGCGACGCCGGAAAACATCGTTGATGATGAGGGAAGAAGAAGCGACATTCAGAATGAAGAAGAGAAGAGTTAA 723 0.4509 MAIHLYKTSIPSTRTRNRLIYGQHHCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAHICLIHYGDGEKRYILHPRGAIIGDTIVYGTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGILVSTDPLKVGAVGFRLGTDGGGWRRRALCRRRLATPENIVDDEGRRSDIQNEEEKS* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1420 240 Gene3D - 105 182 IPR014722 -
Mtr4g1420 240 Gene3D - 12 104 IPR012340 -
Mtr4g1420 240 SUPERFAMILY Translation proteins SH3-like domain 113 184 IPR008991 -
Mtr4g1420 240 SUPERFAMILY Nucleic acid-binding proteins 3 112 IPR012340 -
Mtr4g1420 240 Pfam Ribosomal Proteins L2, C-terminal domain 112 183 IPR022669 GO:0003735|GO:0005840|GO:0006412
Mtr4g1420 240 PANTHER RIBOSOMAL PROTEIN L2 11 185 IPR002171 GO:0003735|GO:0005840|GO:0006412
Mtr4g1420 240 TIGRFAM rplB_bact: ribosomal protein uL2 15 184 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Mtr4g1420 240 SMART Ribosomal_L2_C_2 111 224 IPR022669 GO:0003735|GO:0005840|GO:0006412
Mtr4g1420 240 SMART Ribosomal_L2_2 29 105 IPR002171 GO:0003735|GO:0005840|GO:0006412
Mtr4g1420 240 Pfam Ribosomal Proteins L2, RNA binding domain 29 104 IPR022666 GO:0003735|GO:0005840|GO:0006412
Mtr4g1420 240 PANTHER 50S RIBOSOMAL PROTEIN L2, CHLOROPLASTIC 11 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1420 Mtr-Chr4 25132623 25134265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1420 40 182 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 32.000 9.95e-16 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1420 K02886 - jre:26380847 352.443