Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1412 ATGTTTCAGTCAAACCTCTTGGAAGCTGGTCAGTTCCATCCATTAGAGATGATGCAAAACACTTCAGAAAGCGATGTTCCTCGAATTCGAGAAGATGAATTCGAAAGTGGCACCAAATCTTGCAGTGAAAACCATGAAGGTGGTGCTGCTTCTGGTGAAGAACAAGGACCACGTCCTAAAAGAAAACGTTACCACCGCCACACTCAGCACCAGATCCAAGAAATGGAATCTTTCTTCAAGGAGTGTCCACACCCAGATGACAAGCAAAGGAAGGAGTTAAGCAGAGAGTTAGGGCTTGAGCCTTTGCAAGTCAAGTTTTGGTTTCAAAACAAAAGGACTCAAATGAAGACACAACATGAACGTTCGGAGAATTCTCAGTTAAGAGCAGATAATGAAAAGCTTAGAGCTGATAACATGAGGTATAGAGAAGCTCTTAGCAATGCTTCATGTCCTAATTGTGGTGGTCCAACAGCTATAGGTGAAATGTCATTTGATGAACATCATTTGAGGCTTGAAAATGCAAGGCTAAGAGAAGAGATTGATAGAATTTCAACAATGGCAGCGAAGTACGTTGGGAAGCCAGTGGTGAACTACTCAAACATTTCACCATCTCTCCCACCACGTACGGAAATTGGTTTCGGCAACCCACAAGGGATTGGTACTATGGACATGTATGGAGCCAGTGGAGATATTCTAAGGTCAATTAGTGGGCCGACCGAAGCTGACAAACCAATTATAATAGAATTAGCTGTTGCAGCTATGGAAGAGCTTATTGGGATGGCTCAAATGGGTGATCCTCTTTGGCTAAGAACTACACCTGAAGGAGCTGCTACCGTGCTTAATGAAGATGAATATGTTAGGTCGTTTCCTCGTGGGATTGGACCTAAACCTAATGGTTTCAAATGTGAAGCTTCGAGGGAATCTAGCGTTGTTATCATGAATCATGTCAACCTTGTTGAGATTCTCATGGATGTGAACCAATGGTCAACAGTGTTTGCTGGAATTGTTTCAAGAGCTGTGACTGTGGAGGTGTTGTCAACTGGAGTGGCAGGAAACTACAATGGTGCTTTACAAGTGATGACAGCAGAGTTTCAAGTACCTTCACCCCTTGTGCCGACTCGTGAGAGTTACTTTGTAAGGTATTGTAAACAACATCCTGACGGGACATGGGCAGTTGTGGATGTGTCTTTGGATAATCTGCGCCCGAGTCCTTCATCTAGATGTAGAAGAAGGCCTTCTGGTTGCTTAATTCAAGAGATGCCAAATGGTTACTCAAAGGTGACATGGGTTGAGCATGTAGAAGTGGATGAGAGGGGTGTTCATAATCTATACAAGCAACTTGTTAACACTGGAGATGCATTTGGTGCAAAACGTTGGGTTGCGACTTTAGATCGACAATGTGAAAGACTTGCTAGCTCCATGGCAACAAACATTCCCACCGTTGATGTTGGGGTGATAACAAACCAAGAAGGGAGGAAGAGTATGTTGAAACTGGCAGAGAGAATGGTGATAAGTTTCTGTGGTGGAGTGAGTGCTTCAACAGCACACACATGGACAACACTGTCTGGAACAGGAGCCGATGATGTGAGAGTGATGACTCGTAAGAGTGTCGATGATCCTGGAAGACCTCCTGGTATTGTTCTTAGTGCTGCTACTTCTTTTTGGCTTCCTGTTCCACCAACACAAGTTTTTGAATTTCTTCGTAACGAGAACTCCAGAACTGAGTGGGATATTCTTTCTAATGGTGGAGTTGTCCAAGAAATGGCGCACATTGCAAATGGACGAGATACTGGAAATTGTGTGTCTCTCCTTAGAGTAAATAGTCCAAATTCGAGCCAGAGCAACATGTTAATACTACAAGAGAGTGTAACAGATGCAACAGGCTCATTTGTTATCTATGCGCCAGTAGATATGGTTGCTATGAATGTAGTTCTAAATGGAGGAGATCCAGATTATGTTGCACTTCTTCCATCAGGATTTGCTATCCTCTCTGATGGAAATGGAAATGGAGTCGGCGGTGAAACTGGAGGAGGAGTAGGAGCTGGTGCTGGTGGTGGTGGATCCCTTCTGACCGTCGCTTTTCAAATCTTGGTTGATTCTACTCCAACTGCTAAACTCTCTCTTGGATCAGTTGCTACTGTTAATAGTCTTATCGCTTGTACTGTTGAGAGAATCAAAGCTTCTTTATCTGGTGAAAGTGCTTAG 2205 0.4363 MFQSNLLEAGQFHPLEMMQNTSESDVPRIREDEFESGTKSCSENHEGGAASGEEQGPRPKRKRYHRHTQHQIQEMESFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERSENSQLRADNEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISTMAAKYVGKPVVNYSNISPSLPPRTEIGFGNPQGIGTMDMYGASGDILRSISGPTEADKPIIIELAVAAMEELIGMAQMGDPLWLRTTPEGAATVLNEDEYVRSFPRGIGPKPNGFKCEASRESSVVIMNHVNLVEILMDVNQWSTVFAGIVSRAVTVEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYFVRYCKQHPDGTWAVVDVSLDNLRPSPSSRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDERGVHNLYKQLVNTGDAFGAKRWVATLDRQCERLASSMATNIPTVDVGVITNQEGRKSMLKLAERMVISFCGGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPTQVFEFLRNENSRTEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSPNSSQSNMLILQESVTDATGSFVIYAPVDMVAMNVVLNGGDPDYVALLPSGFAILSDGNGNGVGGETGGGVGAGAGGGGSLLTVAFQILVDSTPTAKLSLGSVATVNSLIACTVERIKASLSGESA* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1412 734 SMART START_1 248 469 IPR002913 GO:0008289
Mtr4g1412 734 SUPERFAMILY Homeodomain-like 52 118 IPR009057 -
Mtr4g1412 734 CDD homeodomain 60 119 IPR001356 GO:0003677
Mtr4g1412 734 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 15 731 - -
Mtr4g1412 734 SUPERFAMILY Bet v1-like 239 471 - -
Mtr4g1412 734 MobiDBLite consensus disorder prediction 25 40 - -
Mtr4g1412 734 MobiDBLite consensus disorder prediction 1 70 - -
Mtr4g1412 734 Gene3D - 291 466 IPR023393 -
Mtr4g1412 734 SUPERFAMILY Bet v1-like 488 726 - -
Mtr4g1412 734 ProSiteProfiles START domain profile. 239 472 IPR002913 GO:0008289
Mtr4g1412 734 SMART HOX_1 59 122 IPR001356 GO:0003677
Mtr4g1412 734 Pfam START domain 249 469 IPR002913 GO:0008289
Mtr4g1412 734 Coils Coil 124 144 - -
Mtr4g1412 734 Gene3D - 48 135 - -
Mtr4g1412 734 ProSiteProfiles 'Homeobox' domain profile. 58 118 IPR001356 GO:0003677
Mtr4g1412 734 CDD START_ArGLABRA2_like 243 468 - -
Mtr4g1412 734 ProSitePatterns 'Homeobox' domain signature. 93 116 IPR017970 GO:0000981|GO:0006355
Mtr4g1412 734 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 15 731 IPR042160 -
Mtr4g1412 734 Pfam Homeodomain 61 116 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1412 Mtr-Chr4 25057984 25065446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1412 1 734 Homeobox Transcription Factor Family AT1G05230 75.505 0.0 1121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mtr4g1412 START 4.5e-58 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1412 K09338 - gmx:100782260 1232.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1412 4 25057984 25065446 Mtr4g1412 4 25057984 25065446 ECH
Mtr2g2976 2 43404059 43411142 Mtr4g1412 4 25057984 25065446 PCT