Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1399 ATGGCTGACACTGAACACTCCTCTAAAAATGTTACAGAAGTTTCTACAGATCAGCAATCAAACCAAAGTTCAAAGGTTGAATTTTCTGAAGAAGAGGAAATGCTTATTACAATGGTTTATAATCTTGTTGGGGAGAGGTGGTCATTGATTGCTGGAAGAATTCCTGGAAGAACAGCAGAAGAAATAGAAAAATATTGGAATTCAAGACACTCGACTAGCGAATGA 225 0.3689 MADTEHSSKNVTEVSTDQQSNQSSKVEFSEEEEMLITMVYNLVGERWSLIAGRIPGRTAEEIEKYWNSRHSTSE* 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1399 74 MobiDBLite consensus disorder prediction 7 25 - -
Mtr4g1399 74 MobiDBLite consensus disorder prediction 1 30 - -
Mtr4g1399 74 Pfam Myb-like DNA-binding domain 25 68 IPR001005 -
Mtr4g1399 74 ProSiteProfiles Myb-like domain profile. 20 70 IPR001005 -
Mtr4g1399 74 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 12 73 - -
Mtr4g1399 74 Gene3D - 27 69 - -
Mtr4g1399 74 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 74 IPR017930 -
Mtr4g1399 74 SMART sant 24 72 IPR001005 -
Mtr4g1399 74 PANTHER TRANSCRIPTION FACTOR TRY-LIKE 12 73 - -
Mtr4g1399 74 CDD SANT 30 67 IPR001005 -
Mtr4g1399 74 SUPERFAMILY Homeodomain-like 9 69 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1399 Mtr-Chr4 24735086 24736115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1399 28 68 MYB Transcription Factor Family AT1G22640 58.537 1.94e-13 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mtr4g1399 Myb_DNA-binding 1.8e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1399 - - rcu:8267373 112.849