Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1373 ATGTTGGTGAAAAGCCAAAATAAAGTGGATGGACACAAGTCCCTCGCGGATACATTGGCGAGATGGAAAGAATATAATGCACGGCTTGAATCGAGTGGTGAAGCTCCGAAGCCAGTTAGGAAAGTTCCTGCCAAGGGATCGAAAAAAGGGTGTATGAAGGGTAAAGGAGGTCCCGAGAACTCGCGGTGTAATTACAGAGGTGTTAGGCAAAGGACTTGGGGAAAATGGGTTGCTGAAATTCGCGAGCCAAATAGAGGGAATAGGCTCTGGTTAGGTACATTTTCAAATGCCGTTGGTGCTGCTCTTGCCTACGATGAAGCAGCGAGGGCAATGTACGGTTCTTGTGCACGCCTGAATTTTCCTAATGTGGAAGTGTCCAATTTCTCTCAGGTGGAATCTTTGAAAGATTCTCCAGCTGCAGATCAATCTGGTTTCGTAAAGACAACAGCAGAGAATACCGAGTCTGTGGTATCGCTGGATAACACTCGGGTAGATGCAGCTGAAGACATTGACATGAAAGATCTTTCCTTGTCCTTAAGTGTGACTGTGAATCATTTGGAAAGGGAAGGTGAATCACTATCTGTGAGTAGTTGA 594 0.4579 MLVKSQNKVDGHKSLADTLARWKEYNARLESSGEAPKPVRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGNRLWLGTFSNAVGAALAYDEAARAMYGSCARLNFPNVEVSNFSQVESLKDSPAADQSGFVKTTAENTESVVSLDNTRVDAAEDIDMKDLSLSLSVTVNHLEREGESLSVSS* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1373 197 CDD AP2 63 123 IPR001471 GO:0003700|GO:0006355
Mtr4g1373 197 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Mtr4g1373 197 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Mtr4g1373 197 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 153 - -
Mtr4g1373 197 Gene3D AP2/ERF domain 64 123 IPR036955 GO:0003700|GO:0006355
Mtr4g1373 197 SUPERFAMILY DNA-binding domain 64 121 IPR016177 GO:0003677
Mtr4g1373 197 MobiDBLite consensus disorder prediction 30 59 - -
Mtr4g1373 197 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Mtr4g1373 197 PRINTS Ethylene responsive element binding protein signature 103 123 IPR001471 GO:0003700|GO:0006355
Mtr4g1373 197 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 153 - -
Mtr4g1373 197 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1373 Mtr-Chr4 24056385 24057705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1373 1 176 AP2-EREBP Transcription Factor Family AT2G40340 47.778 3.49e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr4g1373 AP2 2.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1373 - K09286 gmx:100499747 269.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3011 2 43759184 43761854 Mtr4g1373 4 24056385 24057705 PCT