Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1339 ATGGCAAGAACTCCTTCTTGTGACAAAAAAAGTGGAATGAGAAAAGGGACATGGACTGCTGAAGAAGATAGGAAATTAATTGCTTATGTCACTAGATATGGTTGCTGGAATTGGCGCCAACTTCCCAAGTTTGCAGGTCTTTCGAGGTGTGGGAAGAGTTGTAGATTGAGGTGGTTGAATTATCTAAGGCCTAATATCAAAAGAGGAAACTTTACTCAAGAAGAAGAGGAGTTGATTATCAGAATGCATAAAAATCTTGGGAATAGATGGTCAACCATTGCGGCCGAGTTACCTGGAAGAACAGATAATGAAGTGAAGAACTATTGGCATACTTCCCTAAAGAAGCGAGTTGAACACAACCAAATCACAAATATTGAAGAAACCAAATCGAAAGACATTGAATCCACACAGGATAGGGATATTTCCTTTCTACAAGTTACCCCTCCAGCTAGTTCCCAAACCCTAGATATCACTGGCCCATTTTCCCCACTTTCTTCATCTAGTGAATTCTCTTCTACAGATTATTCAGATCACAGTACCACTTATGTGGATGATTTTGGTTTTCTAGATGGATTTATAGACTACGTGGGTGAAAAATCTTGGGATGAACATTCCAACACACCAACTGAAATAGTGCAAAACAATACTAATCGTGATTTTGAAAGCTTTTTAGATGCGTACAAGGAGTCAACAATTGATAGTTTTTGGACACAACCATATGAAGCTGACATGTCCCACGTTTCAAGCCAATTGCTGGCACCTTTGCCAATGGAACCTGAATATTTTTCTATAGTATATGATGACGATATTTGGAATTGA 819 0.3871 MARTPSCDKKSGMRKGTWTAEEDRKLIAYVTRYGCWNWRQLPKFAGLSRCGKSCRLRWLNYLRPNIKRGNFTQEEEELIIRMHKNLGNRWSTIAAELPGRTDNEVKNYWHTSLKKRVEHNQITNIEETKSKDIESTQDRDISFLQVTPPASSQTLDITGPFSPLSSSSEFSSTDYSDHSTTYVDDFGFLDGFIDYVGEKSWDEHSNTPTEIVQNNTNRDFESFLDAYKESTIDSFWTQPYEADMSHVSSQLLAPLPMEPEYFSIVYDDDIWN* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1339 272 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Mtr4g1339 272 Pfam Myb-like DNA-binding domain 68 111 IPR001005 -
Mtr4g1339 272 SMART sant 67 115 IPR001005 -
Mtr4g1339 272 SMART sant 14 64 IPR001005 -
Mtr4g1339 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Mtr4g1339 272 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Mtr4g1339 272 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Mtr4g1339 272 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Mtr4g1339 272 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 248 - -
Mtr4g1339 272 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 248 - -
Mtr4g1339 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Mtr4g1339 272 Gene3D - 15 67 - -
Mtr4g1339 272 CDD SANT 70 113 IPR001005 -
Mtr4g1339 272 Gene3D - 69 141 - -
Mtr4g1339 272 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1339 Mtr-Chr4 23180051 23181529 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1339 1 127 MYB Transcription Factor Family AT1G06180 66.142 7.12e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr4g1339 Myb_DNA-binding 3.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1339 K09422 - gmx:100777107 307.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1339 4 23180051 23181529 Mtr4g1339 4 23180051 23181529 ECH
Mtr2g3020 2 43883527 43888524 Mtr4g1339 4 23180051 23181529 PCT