Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1336 ATGGCAAGAACTCCTTCTTGTGACAAAAAAAGTGGAATGAGGAAAGGAACATGGACTGCTGAAGAAGATAGGAAATTAATTGCTTATGTCACCAGATACGGTTGCTGGAATTGGCGCCAACTACCAAAGTTTGCAGGTCTTTCAAGGTGTGGGAAGAGTTGTAGATTGAGGTGGCTGAATTATTTAAGACCTAATATCAAAAGAGGAAACTTCACTCAAGAAGAAGAGGAGTTGATTATCCGAATGCATAAAAAGCTTGGCAATAGATGGTCAACCATTGCGGCCGAGTTACCTGGAAGAACAGATAATGAAGTGAAGAACCACTGGCACACTTCCCTCAAGAAGAGAGCTATAGATAACATTGTCACAAATGAAGAAACCAAATCCACACAAGGGAGATGTGTATCCAATTACCAAATTACCCTTCCAGCTAACTCCCAAATCTCAGACACCAATGGCCCTTTATCCCCATTTTCATCATCTAGTGAATTATCTTCCACATCTTCAGATCACAATTCCACTGCTTTGGATGATTTTGGGTTTCTGGATTCATTTATAGAAGATGTGGATGAAAGTTTTTGGCTTCATAATCTTTCCAACAAACCAAGTGGAATAGTGCAAAACCATACTACTGAAAGTTTTGTTATGGATAATGATTTTGGAAGCTTTTTAGATGCTTACAACGAGTCAACAGTGGATAGTTTTTGGACACAACCATATGAAGTTGACATGTCCCACGTTCCAACTGAACTACTGATACCTTTGTCGATGGAATCTGAAAATTTTTCTATAGTATATGACAAGGATATTTGGAGTTGA 819 0.3871 MARTPSCDKKSGMRKGTWTAEEDRKLIAYVTRYGCWNWRQLPKFAGLSRCGKSCRLRWLNYLRPNIKRGNFTQEEEELIIRMHKKLGNRWSTIAAELPGRTDNEVKNHWHTSLKKRAIDNIVTNEETKSTQGRCVSNYQITLPANSQISDTNGPLSPFSSSSELSSTSSDHNSTALDDFGFLDSFIEDVDESFWLHNLSNKPSGIVQNHTTESFVMDNDFGSFLDAYNESTVDSFWTQPYEVDMSHVPTELLIPLSMESENFSIVYDKDIWS* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1336 272 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Mtr4g1336 272 MobiDBLite consensus disorder prediction 145 169 - -
Mtr4g1336 272 Gene3D - 70 137 - -
Mtr4g1336 272 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 219 - -
Mtr4g1336 272 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 219 - -
Mtr4g1336 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Mtr4g1336 272 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Mtr4g1336 272 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Mtr4g1336 272 Gene3D - 15 67 - -
Mtr4g1336 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Mtr4g1336 272 SMART sant 67 115 IPR001005 -
Mtr4g1336 272 SMART sant 14 64 IPR001005 -
Mtr4g1336 272 CDD SANT 70 113 IPR001005 -
Mtr4g1336 272 CDD SANT 17 62 IPR001005 -
Mtr4g1336 272 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Mtr4g1336 272 Pfam Myb-like DNA-binding domain 68 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1336 Mtr-Chr4 23089221 23090429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1336 1 194 MYB Transcription Factor Family AT2G31180 51.546 1.89e-58 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr4g1336 Myb_DNA-binding 3.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1336 K09422 - gmx:778184 332.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1336 4 23089221 23090429 Mtr2g3022 2 43902340 43904582 PCT