Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1335 ATGGTAAGAGCACCTTTCTATGACAAAAATGGTGTTAAGAAAGGTGCATGGAGTAGAGATGAGGATACAAGGTTAAGTGATTATATTCAGAAACATGGTCATTCAAATTGGCGTCAACTCCCCAAGCTTGCAGGTTTATTAAGGTGTGGAAAAAGTTGCAGACTTCGTTGGTTGAATTACTTAAAGCCAAATCTAAAACATGGGAACTACACAAGCGAAGAAGAAGAAATTATCATCAAATTACACTACCAACTTGGAAATAAATGGTCCTTGATTGCTGAAAAACTGCCTGGAAGAACGGACCACGAGATAAAGAACTATTGGCATAGCTACCTAAAAACATGTTCAAAGAGCAAAAACTATAAGGAAACAATTTCTGAGTTGAAATCTAAACCATGTGATACTGTTGAAGAAAATGACACACAACATTTTGTACCACCTGAAAACCCTATCTCTGATGAAGGTAAAGGCTTCCATTATATTTTAGAAAGTTCAACAATAACCATATCCAGAGAAACATCAGTGGAAGATAACTCTTCACCTGCCTCCATCAACTGCCCTGTAATGGAAGAAGACAATGTTGCTCCATGGTTAGTGTTTGAATCATTTAGTGGAGATTTTTGGACTGATCCATGCACCCTAGATGATACATCCACCACTAATGAGATATCAAGTGAAGACATAGACTTCTTGATTCAAAACTTCTATGATGGTTCATATATGTTCTAG 729 0.369 MVRAPFYDKNGVKKGAWSRDEDTRLSDYIQKHGHSNWRQLPKLAGLLRCGKSCRLRWLNYLKPNLKHGNYTSEEEEIIIKLHYQLGNKWSLIAEKLPGRTDHEIKNYWHSYLKTCSKSKNYKETISELKSKPCDTVEENDTQHFVPPENPISDEGKGFHYILESSTITISRETSVEDNSSPASINCPVMEEDNVAPWLVFESFSGDFWTDPCTLDDTSTTNEISSEDIDFLIQNFYDGSYMF* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1335 242 Gene3D - 69 140 - -
Mtr4g1335 242 CDD SANT 69 112 IPR001005 -
Mtr4g1335 242 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mtr4g1335 242 CDD SANT 16 61 IPR001005 -
Mtr4g1335 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Mtr4g1335 242 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mtr4g1335 242 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mtr4g1335 242 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Mtr4g1335 242 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 219 - -
Mtr4g1335 242 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Mtr4g1335 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Mtr4g1335 242 PANTHER MYB-RELATED PROTEIN 308-LIKE 1 219 - -
Mtr4g1335 242 SMART sant 66 114 IPR001005 -
Mtr4g1335 242 SMART sant 13 63 IPR001005 -
Mtr4g1335 242 Gene3D - 7 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1335 Mtr-Chr4 23002301 23004726 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1335 1 113 MYB Transcription Factor Family AT4G09460 65.487 5.19e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr4g1335 Myb_DNA-binding 2.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1335 K09422 - gmx:100781032 228.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3022 2 43902340 43904582 Mtr4g1335 4 23002301 23004726 PCT