LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr4g1293	ATGTCAAAGCTGGCAAAATCCTTGAGTCCTACACCATCAGGTTGGTCATCGAACACATCCTTCTGCCTCTGGACAGGCGTAAGATGCGACGAATTTAACAGCGTAACATCTATCAAGCTTGCTTCCATGTCACTTATTGGAACAATTCCTTCTGATCTCAACTCACTTTCATCACTCACGTCCCTAGTTCTATTTTCCAACTCTCTTTCCGGTGCATTACCCTCACTTGCTAACCTCAGCTACCTCGAAACCGTTTTACTCGACAGCAACAACTTCTCCTCCGTCCCAGACGGTTGCTTCCAGGGACTCGACAACCTCCAGAAACTTTCCATGAGAAACAACATCAACCTGGCTCCATGGACAATTCCCATCGAGTTGATACATTCTACCCGCCTCGACTTAATTGACCTCGCAAATACCAATCTCGTGGGTCCTCTGCCAGAGATATTCCATCGTTTATTTAGTTTAAAGAACCTCCGTCTCTCATATAACAACCTCACGGGGGATTTGCCAATGTCTTTCTCGGGATCTGGTATTCAGAACTTGTGGCTCAACAATCAGAAGCCAAACGGGTTTACAGGTTCTATCAACGTGCTTGCTTCGATGACTCAGTTGACTCAGGTTTGGCTTATGAATAACAAGTTTACTGGTCAAATTCCCGATTTCTCCAACTGTACCGATTTATTTGATCTGCAGCTTCGGGATAATCAGTTAACAGGTGTTGTTCCATCTTCTTTAATGGCTTTGTCTAGCTTGAAGAACGTTTCCTTGGACAACAATCATTTGCAAGGCCCTTTTCCTTCTTTTGGCAAAGGTGTGTCGTTCACTCTTGATGAAATCCATAGCTTCTGTCAAAACGCTCCTGGACCCTGCGATCCGCGGGTCACTACTTTACTCGGTGTTGCTGGAGAATTTGGTTATCCTCTTCAATTGGTGAATTCTTGGAAAGGGAACAATCCTTGTCAAAATTGGAGCTTCGTTGTGTGTTCAGAGGGGAAGATTATTACATTGAACTTAGCCAACCAGAAACTGAAGGGAACCATTTCACCTTCATTTGCAAGTTTAACTTATTTGAGGAACTTGTATTTGGGTGATAACAATTTGACAGGTTCAATACCTTCGAGCTTGACAAGTTTAGCGCATCTTCAGGTTCTAGATGTATCTAACAACAATCTATCTGGAGATGTTCCTAAATTCTCTTCTACACTCAGATTCAATTCAACGGGTAATGTTTTGCTTCGACTTGGAAGTCCGTCTGAAAAGGCAAACACTTCTTACGTGATGCTGGCTTGGTTGCTAGGGGGAGCGTTGTGTGCTGTAGTGGATATGTTATTTATTGTGATGGTTTGTAAACGTAAGGGATATCTAAGCTTATTAAAAACGAGGATCTTCAAGAACACAAGAATAGTTATTGACCACGATATTGAGGATTTCATAAAAAGATATAATTTGTCAGTGCCTAAGCGGTTTAGTTATGCAGATGTGAAAAGGTTCACAAACTCGTTTCGAGATAAGTTGGGCCAAGGAGGATATGGTGTTGTTTACAAAGCCAGTTTACCTGATGGCCGTCATGTAGCGGTGAAAGTGATAAGCGAGTGCAAGGGAAACGGAGAAGAATTTATAAATGAAGTTGCAAGCATAACAAAAACATCACATATGAACGTTGTTTCACTTTTGGGTTTTTGTTATGAGAAGAACAAAAGAGCATTGATATATGAATTCATGTCCAATGGATCATTAGATAAGTTCATATACAAAAGTGGATTTCCAAATGCTATTTGTGATTTGGATTGGAACACATTATTCCAAATCGTAATTGGCATTGCTCGAGGTCTAGAGTATTTACATCAAGGTTGTATTTCAAGAATTTTGCATCTTGATATCAAACCTCAAAACATTCTTTTAGATGAAGATTTTTGCCCAAAAATATCTGATTTTGGTCTTGCTAAAATATGTCAAAAGAAAGAGAGTGTTGTGTCCATGCTTGGGACAAGAGGAACTATAGGCTACATATCACCGGAAGTATTTAGTCGAGCTTTTGGTGCAGTTTCTTCTAAGTCTGATGTATACAGTTATGGCATGTTGATTCTTGAAATGACCGGAGGAAAAAAGAATTATGACACTGGCGGGTCTCATACAACCGAAGCATACTTTCCGGATTGGATATTTAAGGATCTTGAGCAAGGTAATTCCCTTTTAAATAGTTTGGCAATCTCAGAAGAAGAAAATGATATGCTAAAGAAGATTACTATGGTGGCTTTGTGGTGTATTCAAACGAATCCATCAGACAGACCATCAATGAGTAAAGTAATAGAAATGCTGCAAGGGCCACTTCATTCAATACAATATCCTCCAAAGCCTATCTTATTTTCTCCAAAAGTGCAATCTTTATCTTTATAA	2400	0.4	MSKLAKSLSPTPSGWSSNTSFCLWTGVRCDEFNSVTSIKLASMSLIGTIPSDLNSLSSLTSLVLFSNSLSGALPSLANLSYLETVLLDSNNFSSVPDGCFQGLDNLQKLSMRNNINLAPWTIPIELIHSTRLDLIDLANTNLVGPLPEIFHRLFSLKNLRLSYNNLTGDLPMSFSGSGIQNLWLNNQKPNGFTGSINVLASMTQLTQVWLMNNKFTGQIPDFSNCTDLFDLQLRDNQLTGVVPSSLMALSSLKNVSLDNNHLQGPFPSFGKGVSFTLDEIHSFCQNAPGPCDPRVTTLLGVAGEFGYPLQLVNSWKGNNPCQNWSFVVCSEGKIITLNLANQKLKGTISPSFASLTYLRNLYLGDNNLTGSIPSSLTSLAHLQVLDVSNNNLSGDVPKFSSTLRFNSTGNVLLRLGSPSEKANTSYVMLAWLLGGALCAVVDMLFIVMVCKRKGYLSLLKTRIFKNTRIVIDHDIEDFIKRYNLSVPKRFSYADVKRFTNSFRDKLGQGGYGVVYKASLPDGRHVAVKVISECKGNGEEFINEVASITKTSHMNVVSLLGFCYEKNKRALIYEFMSNGSLDKFIYKSGFPNAICDLDWNTLFQIVIGIARGLEYLHQGCISRILHLDIKPQNILLDEDFCPKISDFGLAKICQKKESVVSMLGTRGTIGYISPEVFSRAFGAVSSKSDVYSYGMLILEMTGGKKNYDTGGSHTTEAYFPDWIFKDLEQGNSLLNSLAISEEENDMLKKITMVALWCIQTNPSDRPSMSKVIEMLQGPLHSIQYPPKPILFSPKVQSLSL*	800

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr4g1293	799	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	623	635	IPR008271	GO:0004672\|GO:0006468
	Mtr4g1293	799	ProSiteProfiles	Protein kinase domain profile.	500	782	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mtr4g1293	799	Gene3D	Ribonuclease Inhibitor	293	415	IPR032675	-
	Mtr4g1293	799	Pfam	Leucine rich repeat N-terminal domain	297	330	IPR013210	-
	Mtr4g1293	799	Pfam	Leucine rich repeat N-terminal domain	7	30	IPR013210	-
	Mtr4g1293	799	Pfam	Leucine rich repeat	336	392	IPR001611	GO:0005515
	Mtr4g1293	799	SMART	LRR_typ_2	153	176	IPR003591	-
	Mtr4g1293	799	SMART	LRR_typ_2	379	403	IPR003591	-
	Mtr4g1293	799	SMART	LRR_typ_2	79	102	IPR003591	-
	Mtr4g1293	799	SUPERFAMILY	Protein kinase-like (PK-like)	482	774	IPR011009	-
	Mtr4g1293	799	SUPERFAMILY	L domain-like	15	401	-	-
	Mtr4g1293	799	Gene3D	Ribonuclease Inhibitor	2	288	IPR032675	-
	Mtr4g1293	799	PANTHER	RECEPTOR-LIKE KINASE TMK4	1	775	-	-
	Mtr4g1293	799	Pfam	Protein kinase domain	504	772	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mtr4g1293	799	ProSitePatterns	Protein kinases ATP-binding region signature.	506	528	IPR017441	GO:0005524
	Mtr4g1293	799	SMART	serkin_6	500	778	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mtr4g1293	799	PANTHER	OSJNBA0070M12.3 PROTEIN	1	775	-	-
	Mtr4g1293	799	Gene3D	Transferase(Phosphotransferase) domain 1	575	783	-	-
	Mtr4g1293	799	Gene3D	Phosphorylase Kinase; domain 1	471	574	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr4g1293	Mtr-Chr4	21797369	21804957	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr4g1293	488	793	Receptor kinase-like Gene Family	AT5G38280	60.000	5.92e-129	398

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRK10L-2	Mtr4g1293		Pkinase	4.4e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr4g1293	-		-	cam:101489592	918.687