Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1261 ATGGGTATCAGTATGGCTGCAGAGACTCAGTTCCATGTTTTGGCTGTTGATGATAGTATTATTGATAGAATGTTGATTGAGAGGCTCCTCAAAACTTCTTCTTTTCATGTTACTACAATGGACTCTGCTAGTAAGGCTTTAAAATTTCTTGGTTTGGTTGAGGATGTGGCTTCAGAAGTTCATGGGGATGTAGATGTAAATCTGATCATAGCAGATTATTGTATGCCAGGGATGACTGGCTATGATCTGCTCAGAAAAATCAAGGAATCCAAACTTTTAAAGACATACCGGTTGTGA 297 0.3872 MGISMAAETQFHVLAVDDSIIDRMLIERLLKTSSFHVTTMDSASKALKFLGLVEDVASEVHGDVDVNLIIADYCMPGMTGYDLLRKIKESKLLKTYRL* 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1261 98 SUPERFAMILY CheY-like 10 92 IPR011006 -
Mtr4g1261 98 Gene3D - 3 96 - -
Mtr4g1261 98 Pfam Response regulator receiver domain 13 91 IPR001789 GO:0000160
Mtr4g1261 98 PANTHER TWO-COMPONENT RESPONSE REGULATOR 5 94 IPR045279 GO:0009736
Mtr4g1261 98 ProSiteProfiles Response regulatory domain profile. 12 98 IPR001789 GO:0000160
Mtr4g1261 98 PANTHER RESPONSE REGULATOR RECEIVER DOMAIN PROTEIN 5 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1261 Mtr-Chr4 20306922 20308661 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1261 3 94 Response Regulator Gene Family AT3G57040 60.784 7.98e-37 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr4g1261 Response_reg 2.6e-10 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1261 K14492 - gmx:100787436 154.066