Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1254 ATGCTGTTATCTAAAATGGGTGTTCTTCTGTTCACATTTCTCTACTTGATTTTATTATATTCAATCAACATTGTTGCTTACAAGGATCAAGAATGGAAGAAAGCCACTGCAACTTATGCCAAAGACACAGAAGGATCTCTAATTACAGAAGGAGCTTGTGGTTATGGAGATCTTCACAAAGCTAGCTATGGAAAACATAGTGTTGGATTAAGCACAATTTTGTTCAACAGAGGGAGTACATGTGGGGCTTGCTATGAGATCAGATGTGTTGACCATATCTTGTGGTGTATGCTTGGAAGTCCTTCTGTTATTGTTACTGCCACTGATTTCTGTCCTCCTAATTTTGGCCTCTCAGTTGATTATGGTGGTTGGTGTAACTTTCCAAGAGAACATTTTGAGTTGTCACAAGCTGCATTTGCTGAAATTGCTAAGGGGAAAGCTGATATTATTCCCATTCAATATAGAAGAGTGAAGTGTGAAAGAAGTGGAGGGTTGAAATTCACAATGAGTGGAAGTTCTCATTTCTATCAAGTCCTGATAACTAATGTGGGGTTAGATGGTGAAGTTTTTGCTGTGAAAGTGAAGGGATCTAGAACAGGATGGATACCAATGGCAAGGAATTGGGGAATGAATTGGCATTGCAATGTCAACCTTCAACATCAGCCTTTGTCCTTTGAGGTAACCAGCAGCACTGGAAAAACACTCACATCTTACAATGTAGCACCTCCAAACTGGCAATTTGGACAAACATTTCAAGGAAAACAATTTTAG 771 0.3917 MLLSKMGVLLFTFLYLILLYSINIVAYKDQEWKKATATYAKDTEGSLITEGACGYGDLHKASYGKHSVGLSTILFNRGSTCGACYEIRCVDHILWCMLGSPSVIVTATDFCPPNFGLSVDYGGWCNFPREHFELSQAAFAEIAKGKADIIPIQYRRVKCERSGGLKFTMSGSSHFYQVLITNVGLDGEVFAVKVKGSRTGWIPMARNWGMNWHCNVNLQHQPLSFEVTSSTGKTLTSYNVAPPNWQFGQTFQGKQF* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1254 256 SUPERFAMILY Barwin-like endoglucanases 31 182 IPR036908 -
Mtr4g1254 256 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Mtr4g1254 256 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Mtr4g1254 256 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Mtr4g1254 256 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Mtr4g1254 256 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Mtr4g1254 256 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Mtr4g1254 256 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Mtr4g1254 256 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Mtr4g1254 256 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Mtr4g1254 256 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Mtr4g1254 256 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Mtr4g1254 256 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Mtr4g1254 256 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Mtr4g1254 256 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Mtr4g1254 256 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Mtr4g1254 256 PANTHER EXPANSIN-A15 9 256 IPR002963 GO:0009664
Mtr4g1254 256 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Mtr4g1254 256 Gene3D - 164 256 IPR036749 -
Mtr4g1254 256 Pfam Expansin C-terminal domain 166 242 IPR007117 -
Mtr4g1254 256 Gene3D - 19 160 IPR036908 -
Mtr4g1254 256 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
Mtr4g1254 256 SUPERFAMILY PHL pollen allergen 161 253 IPR036749 -
Mtr4g1254 256 Pfam Lytic transglycolase 69 154 IPR009009 -
Mtr4g1254 256 PANTHER EXPANSIN-A20 9 256 - -
Mtr4g1254 256 SMART dpbb_1 67 154 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1254 Mtr-Chr4 19842388 19844605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1254 14 256 Expansin Gene Family AT4G38210 65.714 4.94e-120 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1254 - - gmx:100809013 475.322