Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1246 ATGGCCTTAGATCAATACATGGACGATACCGTCTCTCAAATTGATACCTTTGAAGAGAAGCCATCTTTGAAAAACTGGAAAACCTCCACGGATGTGATTGCAGATTCTGATAGAAATGCATCTAGTGGTTTTGACTGTAACATCTGCCTGGATTGTGTGCAAGACCCAGTTGTCACTTTTTGTGGTCATCTTTACTGCTGGCCTTGCATTTACAAATGGCTTGACATACAAAGTGGCATCTCTTCCGAAAACGAGAAGCAGAAGCCACAATGTCCGGTATGCAAATCAGAACTCTCTCAATCCTCGCTAGTTCCATTATATGGCCGTGGCCAAACCATGACTCTGTCTGAAGGCAAGGCTCAGCAAGTAGGGATTGTCGTGCCTCGAAGACCTACGGGTCCAAGATCATTTAATCCTACTACTGTTTCACAGCCTACTTATCAAAATTATCAACATCCTCGGCAATTCAACTCAATTCCGAGCAGTTACCCTTCACCGATGTTTAGTACAAGTGGTTCGGCACTAGATAACACATATGGAATCTTTGGTGAAATGATATATGGAAGGATGTTTGGTAACCAGATAGAAAACATGTATACATATCCTAATTCTTATAGTTTTCAAGGGACCAATAATCCAAGGATGAGAAGACATTTAATGCAAGTTGATAAATCACTCAACAGAATCAGTTTTTTCCTCTTTTGCAGCTTAGTTTTGTGTGTTCTCTTATTTTGA 735 0.4054 MALDQYMDDTVSQIDTFEEKPSLKNWKTSTDVIADSDRNASSGFDCNICLDCVQDPVVTFCGHLYCWPCIYKWLDIQSGISSENEKQKPQCPVCKSELSQSSLVPLYGRGQTMTLSEGKAQQVGIVVPRRPTGPRSFNPTTVSQPTYQNYQHPRQFNSIPSSYPSPMFSTSGSALDNTYGIFGEMIYGRMFGNQIENMYTYPNSYSFQGTNNPRMRRHLMQVDKSLNRISFFLFCSLVLCVLLF* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1246 244 ProSitePatterns Zinc finger RING-type signature. 61 70 IPR017907 -
Mtr4g1246 244 ProSiteProfiles Zinc finger RING-type profile. 46 95 IPR001841 -
Mtr4g1246 244 SMART ring_2 46 94 IPR001841 -
Mtr4g1246 244 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 244 IPR045103 GO:0005783|GO:0006511|GO:0061630
Mtr4g1246 244 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 3 244 - -
Mtr4g1246 244 SUPERFAMILY RING/U-box 42 107 - -
Mtr4g1246 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 122 IPR013083 -
Mtr4g1246 244 CDD RING-HC_AtRMA_like 44 96 - -
Mtr4g1246 244 Pfam RING-type zinc-finger 46 92 IPR027370 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1246 Mtr-Chr4 18711994 18714949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1246 39 244 C3H Transcription Factor Family AT4G28270 39.336 1.48e-44 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1246 K10666 - gmx:100785491 327.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1246 4 18711994 18714949 Mtr4g1246 4 18711994 18714949 ECH