Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1239 ATGATTCAGAACACTGATATGAGACTTGAATCAGGGACTTGTAACGTGTGTTCGGCTCCTTGTTCATGTTGCATGCATCTTAATCAAGCTCTTATGGAGTCAAAGGCTGAAGAATACTCTGATGAAAACTGTCGCTTAGTTGAGGATACTCGGTATCCTGCAGACGAGGGTGATGGATCTTATGTTAGGGGCAGAACTTGTGAAAGATTGAAGCATTCTGACAGTGAAACCAGTAACATGCCTAGTATTTTCTCCAGTCACGATTCTCTATCTGAAAATACCGAGAGTAAACAGATCATTTCAGAAAAGTGTCAGGATTCTAAGTGTTTAGAAGGTCTTGATGATAGCATTTGTTGTATCAGTGGAGCCAGTAATGCTAATTTAGTAAGTTGTAGTAATCAAATAACTTCAGACAAAATAAATATATCTTCTAGTTCAGCTTCAGTTAGTCTCTGTGTGCCACAAGGGTCTGGAATTGCGCAATCTGTTGATATGTTGGGTTCATCTGAAATTCTCTCATCTAAATATGCAGACATTCCGGAAAAATTGTCAGAATGCTGTATGGAAAATGTCGATTCATCTCTGACCAAAGATAGAGAACCTATTATTGTTTCTGGTGAAAAATCTCTTCCAGATAAGGGTGAATTTGTTAGTGGTACGGCCGAAGTGTCACAAAAAATGTATCCAAAGTCAGAAGCTGATGCTGACAACGATGTTAGTGTTGCTGAAGATGGGGATCATAAATGTTCAGCCCCTGATGGGCTGCATGAGAAGGCTGAGGAGCAGGATGAAGTACTTGGGATATCTGTACCTCAACCAGAAGATGAGAGTGATGAATCAGATTTTGTTGAGCATGATGTAAAAGTATGTGACATCTGTGGAGATTCTGGTCGTGAGAACCTGCTTGCCATATGTAGTAGGTGCAGTGATGGTGCAGAGCACACATACTGCATGAGGGAAATGCTTGAAAAAGTGCCTGAAGGGGATTGGTTTTGTGAGGAATGCCAATATGCTGAAGAGACTGCCAACCAAAGATTGGAAGGAAAAAGTGGTCATAAAGTTAGTTCCACTTCTCAAATTACTGGCAAAAGGTCTTCTGAAATCATGGAATTAGTTGCAGCAGCAAAGAGGCGAGCCCTCGAATCACGCACTGGATCACCGAAGGCATCAAGCCCCAGGAGATTAGTTCCATTGTCACGGGAGTCTTCATTCAAGAGCTTAGACAATGGAAAGGAGAAACCTGTTCAAACTTCAAGGAGAATGGGTACATTGTTGAAATCTTGTTCATTCAACAACTTCAGTTCCAAATCAAGAGTCAAACTTGATGATGATGTTCCTCAAAAGCAGAAAGGGGGTGGTGAACATGTCTCTAAGAACACGGAGACTCCTATCAGGACAATAGGAAAACCAATGTCATTCAAATCCTCAAATTTGGGTCGTGCTACTGAATCAAAAGTTAAAATGCTTTCTCCTAAGTCTGGAACTGCTCAGGATTTGAAAGGATCAAGCCTTGCAAAAGAATCAGGTGTATTTGACAGGAAATCTCTGTCTAGGATTGATCGGCCTGTCGTCTGTTCAACTATGGCTAGTTCTGTCATTTCCACACACAATCAGAAGCTTACACCTCGTGGTGAAACTGTTAAACCTTTAGCAATTAACTGCAACCGGGATTTTAAAGTTAACCATGATGGGAAATCAAGTTCATTATCAAAGTCCGTTAATAATATAAGCAACAAAAGTTCAGAACCTCAAGTTATTTCAGAGAAAATGTCAACCAGTGTGGATGACACTCAATTGGATGGGCTACCTCGATTACAAGAAACAGAAAACCAGGTTGACAAAACAAAAGATAGTTATACTCATCGTGTGAGGTCAGATACTGATGCTTCAAAATCTCCGTTCTGTCATAAATGTAAAGATTTTGGCCATGCTACAGAATGCTGTACAGTTAGTGTAGCACAAGAATTTGGTACTGATGGATCACTTAATGCCGTAAGTAGTCCAAAAGAGTCACATACAAGTAATAGATTGAAAGCTGCAATTCAGGAAGCTTTGCTTAAAAGGCCTGAAATACACAAGAAGAAAAATCTAAATGATCAAACTGATCAGTTTCCTCCATCAGGCACAATCTTGAAATGTAAAGTCAGTTCTCAAGACCAAGTGGAGGTCTCTGCTTCTAACACACTGAAAAATAGTATTTCTGTTGTAGAAATCAATGCCAGGCAGGAAATGCTAGGGAATTCTACATCTGAAACGTCCAAATGTTTGTCTGGTAACGATTTGAAGCAACTTAAAACTGATTTTTGCTCTCAACTGAAAAAGTCAGATTCTGGTATTCCTGCTTCTGAAAAGCCTGTGTTGAGAGACTTGCCATATCATGCTTCGGCAAATTCAAGTGTTACATCAGAGAAGTCAGCCATTCCAGAATACAAATACATATGGCAGGGTGTCTTTGAAGTGAATGGAAGTGGAATGTCTCCTGACCTTTATAACGGGATTCAAGCACATTTATCCTCGTGCGCTTCCCCCAAGGTTCTTGATGTAGTGGACAAGTTCTTACCTGAAATTTCCCTGCACGAAGTTTCTCGCTTGAGCACATGGCCTTCACATTTTCATCAATGTGGTGCTAAAGAAGATAACATTGCTCTTTACTTCTTCGCCAAAGACATTGAAAGTTACGAGAGACACTACAAGGGTCTGCTGGATCACATGATTAGACATGATTTAGCACTCAAAGGTTTTTTTGATGGCGTCGAACTTCTCATATTTGCTTCCAATCAGCTCCCTGAAAATTCACAGCGTTGGAATATGCTGTTTTTTTTATGGGGCATATTTAGAGGGAGGAGGATTAATCATTCAGATTCTGCAAAAGATATTGCTTTACCTAGTTTGAATGTGGCGGTGTCAAATGAGAAGGATTTTCCGACTGCTGTCATGACCTTGTCTGATACCCGCTGTTCACCAGTGCGCATCGATGAAGAATCAATAGCTTGTGGTGATATTTTCAGTGAACTTCCAGCCACTTCTGTTGACCAAGGTCATATTATGCTAAGTAGGGATTTTGATATAAAAGAAACTATTTTTGACCAGACACATTTGGGTTCACAAGTAAACTTCGACAGGCAAGATAGTAGAATCAGTGCCAAATCTTCGTCAAGGATTTCAACAAATGGTATACAACCGTGTCCAGAAATGAATTCCACTGGTTCATCTCTGAAACAGAAAGGTAGTTTGTCAGAGCATGGACTGCACAGAGGGTCAAAACCTCTGGAAGAGGTGGGAATAATTGTAAGAGCTATGACTGTGGAAACAAAAGCTAATTGTGGTATTTCTGTCAAGCAAGAGAACTCCGTGTCTTCAAGGATTCCTCATGTTGACAATCAAGAGGTACTCACTGCAAACAGCACCAGGAAAGATAAAATTTCAGAGAGAACAAACAATAATGAAAATCATCGAAGGCCTAAAAGGAAAGAGAGAGAAGATGGTCTCAATATTAATGTAGAAGCAACTTTTCAGGGAGATCTGGCCATAGAAGCGGTCAGCTGTCGGCTACCTAATGTTATAAAAGTTGAGCATATAGACCATTCTGACACAGTTATGGACGCTTCTGCAGCTGGCTGTCAGGAAATGCCTCGGAATAAGATAGATGGGAAGTTGGAAGATACAGACAGTTCTAGCAAGCTGCAGTCAGGTTTCAGTGGAATCTATGGATGTTACAGTTCTGTAGCTAGGGATTCTTTGAATGGAAGTTCTGCATCACTTGTAAACGATTTTGGTTCCGCATATTCAGTTGAAGACAAAGGATGCAAAGAAGCTTGTGATGAGAAAATCATCCACGAGGACCTTGGAACGACGGAAAAAACCTTCTTCCCTATTGATACGCACAATACAAATGACTCACGATTGGTGCTGGATAGCATGTCACTGAAAGGGCCTCACTGGAGCGGTGACCAATTTGAAGTTGGGATTCCACGTCTCGAGCTTGCGTTGGGAGGTGAAATGGAACAGTCACTGGAGGGTACGCGTCCTTTCTTTGCTGGGATAGCTGATAAGAAAAGTAACCAGGAAAAGACTCCAGATTGTTTGGAAGCTGAGCAAGAGGATGGCGACAGTGTTGCCGCATCTCTTTCCCTGTCTCTATCTTTCCCATCTTCAAACAAGGAACCCACAAAACATGCTTCAAAAGATGAGCATTTGCCTGATGTGCATCACATGAATTCTTCGTTGCACCTTTTTGGGAGATTTACTGACAAATAA 4257 0.4099 MIQNTDMRLESGTCNVCSAPCSCCMHLNQALMESKAEEYSDENCRLVEDTRYPADEGDGSYVRGRTCERLKHSDSETSNMPSIFSSHDSLSENTESKQIISEKCQDSKCLEGLDDSICCISGASNANLVSCSNQITSDKINISSSSASVSLCVPQGSGIAQSVDMLGSSEILSSKYADIPEKLSECCMENVDSSLTKDREPIIVSGEKSLPDKGEFVSGTAEVSQKMYPKSEADADNDVSVAEDGDHKCSAPDGLHEKAEEQDEVLGISVPQPEDESDESDFVEHDVKVCDICGDSGRENLLAICSRCSDGAEHTYCMREMLEKVPEGDWFCEECQYAEETANQRLEGKSGHKVSSTSQITGKRSSEIMELVAAAKRRALESRTGSPKASSPRRLVPLSRESSFKSLDNGKEKPVQTSRRMGTLLKSCSFNNFSSKSRVKLDDDVPQKQKGGGEHVSKNTETPIRTIGKPMSFKSSNLGRATESKVKMLSPKSGTAQDLKGSSLAKESGVFDRKSLSRIDRPVVCSTMASSVISTHNQKLTPRGETVKPLAINCNRDFKVNHDGKSSSLSKSVNNISNKSSEPQVISEKMSTSVDDTQLDGLPRLQETENQVDKTKDSYTHRVRSDTDASKSPFCHKCKDFGHATECCTVSVAQEFGTDGSLNAVSSPKESHTSNRLKAAIQEALLKRPEIHKKKNLNDQTDQFPPSGTILKCKVSSQDQVEVSASNTLKNSISVVEINARQEMLGNSTSETSKCLSGNDLKQLKTDFCSQLKKSDSGIPASEKPVLRDLPYHASANSSVTSEKSAIPEYKYIWQGVFEVNGSGMSPDLYNGIQAHLSSCASPKVLDVVDKFLPEISLHEVSRLSTWPSHFHQCGAKEDNIALYFFAKDIESYERHYKGLLDHMIRHDLALKGFFDGVELLIFASNQLPENSQRWNMLFFLWGIFRGRRINHSDSAKDIALPSLNVAVSNEKDFPTAVMTLSDTRCSPVRIDEESIACGDIFSELPATSVDQGHIMLSRDFDIKETIFDQTHLGSQVNFDRQDSRISAKSSSRISTNGIQPCPEMNSTGSSLKQKGSLSEHGLHRGSKPLEEVGIIVRAMTVETKANCGISVKQENSVSSRIPHVDNQEVLTANSTRKDKISERTNNNENHRRPKRKEREDGLNINVEATFQGDLAIEAVSCRLPNVIKVEHIDHSDTVMDASAAGCQEMPRNKIDGKLEDTDSSSKLQSGFSGIYGCYSSVARDSLNGSSASLVNDFGSAYSVEDKGCKEACDEKIIHEDLGTTEKTFFPIDTHNTNDSRLVLDSMSLKGPHWSGDQFEVGIPRLELALGGEMEQSLEGTRPFFAGIADKKSNQEKTPDCLEAEQEDGDSVAASLSLSLSFPSSNKEPTKHASKDEHLPDVHHMNSSLHLFGRFTDK* 1419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1239 1418 MobiDBLite consensus disorder prediction 563 626 - -
Mtr4g1239 1418 MobiDBLite consensus disorder prediction 378 421 - -
Mtr4g1239 1418 MobiDBLite consensus disorder prediction 1372 1388 - -
Mtr4g1239 1418 MobiDBLite consensus disorder prediction 439 503 - -
Mtr4g1239 1418 SUPERFAMILY FYVE/PHD zinc finger 277 340 IPR011011 -
Mtr4g1239 1418 MobiDBLite consensus disorder prediction 1136 1161 - -
Mtr4g1239 1418 MobiDBLite consensus disorder prediction 1048 1085 - -
Mtr4g1239 1418 MobiDBLite consensus disorder prediction 1355 1402 - -
Mtr4g1239 1418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 230 349 IPR013083 -
Mtr4g1239 1418 MobiDBLite consensus disorder prediction 1125 1161 - -
Mtr4g1239 1418 SMART PHD_3 289 336 IPR001965 -
Mtr4g1239 1418 MobiDBLite consensus disorder prediction 1048 1077 - -
Mtr4g1239 1418 MobiDBLite consensus disorder prediction 459 502 - -
Mtr4g1239 1418 MobiDBLite consensus disorder prediction 439 455 - -
Mtr4g1239 1418 MobiDBLite consensus disorder prediction 229 253 - -
Mtr4g1239 1418 ProSiteProfiles Zinc finger PHD-type profile. 287 338 IPR019787 -
Mtr4g1239 1418 MobiDBLite consensus disorder prediction 565 605 - -
Mtr4g1239 1418 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 421 1164 - -
Mtr4g1239 1418 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1165 1407 - -
Mtr4g1239 1418 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 7 153 - -
Mtr4g1239 1418 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 175 414 - -
Mtr4g1239 1418 MobiDBLite consensus disorder prediction 607 626 - -
Mtr4g1239 1418 PANTHER - 1165 1407 - -
Mtr4g1239 1418 PANTHER - 175 414 - -
Mtr4g1239 1418 PANTHER - 7 153 - -
Mtr4g1239 1418 PANTHER - 421 1164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1239 Mtr-Chr4 18365689 18374486 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1239 286 373 C2H2 Transcription Factor Family AT3G01460 30.682 2.61e-08 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1239 - - mtr:MTR_0001s0570 2771.88