Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1234 ATGTCGACCCCTTTTTTCTATCTTATGGCTGCCACTGACGACAACAACAACAACAAACCCAAGGATTATTACAAAGTGCTGGAGATTGAATATGATGCAACAGATGAAGATATCAGATTAAATTACCGAAGACTCGCCCTGAAATGGCATCCTGACAAACACAAAGATGATAGTGCTGTTACTGCAAAATTTCAAGAGATAAATGAAGCTTACAATGTATTGAGCGATCCTGCCAAGCGTTTAGACTATGATTTAACTGGGGCATGTGAGATCGAGAAGTATAGCTTGCAGGAATATCTTGCCAGATTTAAAGGAATGATTCTGACCTGCAATGGACTTGGTATCAACAATGAAGACAGATGGTCACAACAATTGATTGAAGATTTTCAACCACTAGATAAATAA 405 0.3827 MSTPFFYLMAATDDNNNNKPKDYYKVLEIEYDATDEDIRLNYRRLALKWHPDKHKDDSAVTAKFQEINEAYNVLSDPAKRLDYDLTGACEIEKYSLQEYLARFKGMILTCNGLGINNEDRWSQQLIEDFQPLDK* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1234 134 SMART dnaj_3 21 79 IPR001623 -
Mtr4g1234 134 CDD DnaJ 22 76 IPR001623 -
Mtr4g1234 134 ProSitePatterns Nt-dnaJ domain signature. 64 83 IPR018253 -
Mtr4g1234 134 SUPERFAMILY Chaperone J-domain 19 106 IPR036869 -
Mtr4g1234 134 PRINTS DnaJ domain signature 24 42 IPR001623 -
Mtr4g1234 134 PRINTS DnaJ domain signature 42 57 IPR001623 -
Mtr4g1234 134 PRINTS DnaJ domain signature 59 79 IPR001623 -
Mtr4g1234 134 PRINTS DnaJ domain signature 79 98 IPR001623 -
Mtr4g1234 134 Pfam DnaJ domain 22 84 IPR001623 -
Mtr4g1234 134 Gene3D DnaJ domain 7 101 IPR036869 -
Mtr4g1234 134 PANTHER DNAJ PROTEIN-LIKE 14 126 - -
Mtr4g1234 134 ProSiteProfiles dnaJ domain profile. 22 87 IPR001623 -
Mtr4g1234 134 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 14 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1234 Mtr-Chr4 17993309 17997679 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1234 23 84 C2H2 Transcription Factor Family AT1G74250 46.269 1.33e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1234 - - gmx:100527491 219.164
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1234 4 17993309 17997679 Mtr4g1234 4 17993309 17997679 ECH