Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1201 ATGGCAAAGAAAAAGAAGAGCTGGTTTAATATAGTGAAGAGGTTTTTTGTATGGGACTCACATTCTACACAAGAGAAGAAGGAGAAAAGAAGGAAATGGATATTTGGAAGGTTAAAGACAAAAAAGTTACCTTCAATTACAGCTCCACCAACAATATCAAAAGAAACAGAGGAGGAAAAAACCAAACATTCTGATTCTGAAGATGCTGTTAGTGCTACTGAAGTTGTTTCAGAATCTATTTATCAAAAGCAAGATAACTCTGAAGAATCTCAACCTATCAAAATCCGGAGGGAGATTAAAGAATTTTCAGCCATCAAAATTCAAACTGCTTTTAGGGGTTACCTTGCAAAGAAGGCGTTGAGGGCATTGAAGGGAATAGTGAAACTTCAAGCTATCATTCGTGGAAGAGCAGTGAGACGCCAAGCTATGAATACACTGAAGAGCTTGCAGTCAATTGTAAGTATCCAATCAAAGATTTGTGCGAGGAGACTCCAAATGGTTGAAGGAAAATGGGATTATTTTGAAGATGAAGAGATGCATAGTTCTAGAGACAAGATAATTAGGATGGACTCAAACAGTGAAAGAAAGTGGGATGACAGTACTTTATTGAAGGAAGAGGTAGATGCTTCTTGCATGATCAAGAAAGAAGGCATTATTAAGAGAGAAAGAATAAAAGAATACACATTTAATCATAGAAGGTCAGCAGAGTCAGAAAGAAGTAAAGTGAATGGAAGATGGAGGTACTGGCTGGAGCAATGGGTAGATACACAACTTTCTAAAAGCAAAGAACTCGAAGATTTAGACTCAGTTTACAGTTCACATTCTAAAATCGGTGACGAATTTGGAGGAAGACAACTTAAGCTGAGAAGTACTAATAGACAAAATCCAAATCCAATTGAAGGATTGGAATCACCAATACTATTTGCAAGAAATTCTTTTCCTCACAGGAGGAAGTGTTCAATAGGAGAAGACCAATCGTTTTCAAGCTCTCCTGCAACTCCGGCATACATGGCTGCTACTGAATCGGCAAAAGCAAAAGCAAGATCAACAAGTTCACCAAAAGCAAGGTCTTGGAACTATGACATGAACTCTGATAGCTATTTATCACCTTGCAAGAAAAAGTTATCAATTGTTTCATCTGTTAACAGTGAAGTCCTTAATAGAGGCAAGCTTAGTGGTTGTAACCAACAAAGATCTCCTAGTTTTAAGGGTATTTCAGTGCCTATAAAATCAAGCAGGACTATAAAGGATCTCAGTATTAATTCAGATAGCTCACTGCCTAATTGGGATAGACAAAGTTCCTTCAAATGA 1311 0.373 MAKKKKSWFNIVKRFFVWDSHSTQEKKEKRRKWIFGRLKTKKLPSITAPPTISKETEEEKTKHSDSEDAVSATEVVSESIYQKQDNSEESQPIKIRREIKEFSAIKIQTAFRGYLAKKALRALKGIVKLQAIIRGRAVRRQAMNTLKSLQSIVSIQSKICARRLQMVEGKWDYFEDEEMHSSRDKIIRMDSNSERKWDDSTLLKEEVDASCMIKKEGIIKRERIKEYTFNHRRSAESERSKVNGRWRYWLEQWVDTQLSKSKELEDLDSVYSSHSKIGDEFGGRQLKLRSTNRQNPNPIEGLESPILFARNSFPHRRKCSIGEDQSFSSSPATPAYMAATESAKAKARSTSSPKARSWNYDMNSDSYLSPCKKKLSIVSSVNSEVLNRGKLSGCNQQRSPSFKGISVPIKSSRTIKDLSINSDSSLPNWDRQSSFK* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1201 436 PANTHER IQ-DOMAIN 5-RELATED 6 422 - -
Mtr4g1201 436 ProSiteProfiles IQ motif profile. 124 151 IPR000048 GO:0005515
Mtr4g1201 436 ProSiteProfiles IQ motif profile. 100 128 IPR000048 GO:0005515
Mtr4g1201 436 Pfam Protein of unknown function (DUF4005) 323 397 IPR025064 -
Mtr4g1201 436 MobiDBLite consensus disorder prediction 53 69 - -
Mtr4g1201 436 MobiDBLite consensus disorder prediction 70 88 - -
Mtr4g1201 436 MobiDBLite consensus disorder prediction 45 89 - -
Mtr4g1201 436 Gene3D - 100 165 - -
Mtr4g1201 436 Pfam IQ calmodulin-binding motif 103 121 IPR000048 GO:0005515
Mtr4g1201 436 PANTHER IQ-DOMAIN 11 6 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1201 Mtr-Chr4 16961606 16965355 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1201 4 436 IQD Protein Family AT5G13460 47.021 7.96e-114 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1201 - - gmx:100800192 627.476