Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1185 ATGAGTAATTATATAGAGAACTTTCATGTTGAACCCAAGCGCCCGTCAGAAGCCGCTCAACGCAGATGGAGATCCGCTGTCTCCGTTGTCAAGAACCCTCGACGCAGGTTTCGATGGGTGGCCAATCTCGCTCAACGTGCCGACGCCGAACAGAAACGCAAGAAGCTTCAGGAGAAGATACGAGTTGCTCTTTATGTACAAAAAGCAGCATTGCATTTTATAAACGCTGGAACCCGAGGAACTGGTGATTACATGCTCTCCAAAGAGATTCAAGAAGCAGGTTTCGGAATCGTGCCTGATGAATTAGCATCCATTGTTAGATCTCATGACACTAAATGTTTAGAACATCATGAGGGAGTTGAAGGATTGGCCAAAGCTGTCCGCGTATCATTTCAAGGCGGTGTTAGTTCAAGCGACGTAAAACATAGACAAGATATCTATGGTCATAACCGCCACACGGAGAAACCCTCAAGGAGTTTTTGGATGTTTGTTTGGGATGCAATGCAAGACTTGACACTAGTCATCCTTATTCTATGTTCTGTAGTATCAATTGGTGTTGGAATCTTAACCGAAGGTTTTCCTAAAGGTATGTATGATGGAGTTGGAATCATACTATGTATTATTTTAGTGGTTTTTGTCACTTCAATAAGTGACTATAAACAGTCTTTGCAATTTAAGGATTTGGATAAAGAGAAGAAAAATGTAAGCATTCATGTTACAAGAGATAGTAGAAGACAAAAGGTTTCAATTCATGATCTAGTAGTTGGAGATATAGTTCATCTCGCAATCGGAGACATAGTTCCTGCAGATGGATTATATATATCAGGATTTAGTTTATTGATCGATGAATCAAGTTTATCCGGTGAGAGTGAAGCCGTAAATGTTGATCAACAAAAGCCATTTCTTCTATGTGGAACCACAGTTCAAGATGGTTCTGCTAAGATGCTCGTGACTTCGGTTGGTATGAAGACGGAATGGGGAAGATTGATGGAAACTTTGAATGAAGGCGGAGATGATGAGACACCTCTTCAGGTGAAACTAAATGGTGTTGCTACACTAATTGGAAAAATAGGGTTAGGTTTTGCATTGGTAACATTTTTAGTTCTTACTGGTAGGTTTTTGGTTGTGAAAATATCTCACAATAGCATCACTAAATGGGATCTAAATGATGCTTCTATGCTTCTCAATTTCTTTGCTACTGCTGTTATTATAATAGTCGTTGCGGTTCCTGAGGGTTTGCCTTTAGCAGTTACACTAAGTCTTGCGTTCGCGATGAAGAAATTGATGAATGATAAGGCACTTGTTAGACACTTATCTGCATGTGAAACAATGGGTTCTGCTGGTTGTATTTGCACTGATAAAACTGGAACTTTGACCACAAATCAAATGGTTGTTGACAAAATATGGATTTGTGAACAAACTAAGCCGATTAAAACTGGAAATCGTGATGATGGTAATTTATTGAAGAACTCAATTTCCGAGGAGATATTCGATCTCTTTTTGCAGTCAATATTTCAGAATACTGCCTCAGAGGTTGTGAAAGGTGAAGATGGAAAGAACAAGGTGATGGGAACTCCAACAGAATCAGCATTGCTTGGATTTGGTTTGATTTTAGGAGGTGATACTAAGTTTTACAATGACAAGTATAAGATAGTTAAGGTTGAACCTTTCAATTCAACGCGTAAAAAGATGTCTGTTCTTGTTTCTCTTCCGGATAACAATAACAAAACTAGAGCATTCTGCAAAGGAGCATCAGAAATAGTGGTGAAAATGTGTGACAAAGTTGTTAACTCAGAAGGTAAAGTTGTTGATTTGAACGAACAACAAAGAAATAGCATCAATGAAGTAATCAATGGTTTTGCTTCCGATGCACTGAGAACACTCTGTGTAGCCTTCAAGGATATTGAAGCGTCTTCTGAAGATGGCAACAGCATTCCGGAGGATGAATATACTTTAATTGCTATTATTGGGATCAAGGATCCAGTGAGGCCTGGAGTTAAAGAAGCTGTTAAGACTTGTTTGGATGCTGGAATTACTGTTAGAATGGTGACCGGTGATAATATAAACACCGCTAAAGCTATAGCTAGAGAATGCGGTATCTTGACCGATGGATTGGCAATAGAGGGACCGGATTTTCGGAACAAAACTCAGCGAGAAATGGAAGAGATAATACCTAAATTGCAGGTAATGGCTAGATCATTGCCACTTGATAAGCATACCTTGGTGAAACATTTGAGGAATGACTTTAATGAAGTTGTGGCAGTAACAGGTGATGGGACCAATGATGCACCAGCTTTGCATGAAGCTGATATTGGATTTGCTATGGGTATTGCTGGAACAGAGGTTGCAAAAGAGAATGCAGATGTGATTGTAATGGATGATAACTTTACAACAATTGTGAATGTTACAAGATGGGGCCGTTCTGTTTACATTAACATACAAAAGTTTGTCCAGTTCCAATTAACTGTTAATGTTGTAGCTCTCATGCTCAATTTTGTTTCAGCTTGTGTCTCAGGATCTGCTCCCCTTACTGCTGTTCAAATGCTATGGGTAAACATGATTATGGACACATTAGGTGCATTGGCATTGGCTACAGAACCACCACATGATGGGTTAATGAAGAGACCACCTATTGGAAGAAATGCAAAGTTCATAACTGGGGTGATGTGGAGGAATATCATTGGTCAGAGCCTTTATCAAACTATTGTTCTTTTGGTTCTTAAATTTCGTGGTGAAAAGATTCTTAAGCTCAATGGACCTGATGCTACCTCTATTCTTAATACTGTCATATTCAACACCTTTGTCTTTTGCCAGGTATTCAACGAGATAAACAGCCGTGACATGGAAAAGATTAATGTTTTGAAAGGCCTATTGAGTAGCTGGATTTTTCTGATGGTAATGGCCTCAACAGTATGCTTTCAAGTCATAATAGTTGAATTCCTTGGTGCTTTTGCTCAAACAGTGCCACTGAGTAGAGACTTATGGTTAACAAGTGTGATGATTGGTGCTGTAAGTTTAGTAGTAGCTGTTGTCTTAAAGTGCATTCCAGTCCCTGTCAAAAATTACGTTGCAACACATCATGATGGTTATGAGCAACTCCCAACTGGACCAGAGTTGGCATGA 3123 0.3935 MSNYIENFHVEPKRPSEAAQRRWRSAVSVVKNPRRRFRWVANLAQRADAEQKRKKLQEKIRVALYVQKAALHFINAGTRGTGDYMLSKEIQEAGFGIVPDELASIVRSHDTKCLEHHEGVEGLAKAVRVSFQGGVSSSDVKHRQDIYGHNRHTEKPSRSFWMFVWDAMQDLTLVILILCSVVSIGVGILTEGFPKGMYDGVGIILCIILVVFVTSISDYKQSLQFKDLDKEKKNVSIHVTRDSRRQKVSIHDLVVGDIVHLAIGDIVPADGLYISGFSLLIDESSLSGESEAVNVDQQKPFLLCGTTVQDGSAKMLVTSVGMKTEWGRLMETLNEGGDDETPLQVKLNGVATLIGKIGLGFALVTFLVLTGRFLVVKISHNSITKWDLNDASMLLNFFATAVIIIVVAVPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSAGCICTDKTGTLTTNQMVVDKIWICEQTKPIKTGNRDDGNLLKNSISEEIFDLFLQSIFQNTASEVVKGEDGKNKVMGTPTESALLGFGLILGGDTKFYNDKYKIVKVEPFNSTRKKMSVLVSLPDNNNKTRAFCKGASEIVVKMCDKVVNSEGKVVDLNEQQRNSINEVINGFASDALRTLCVAFKDIEASSEDGNSIPEDEYTLIAIIGIKDPVRPGVKEAVKTCLDAGITVRMVTGDNINTAKAIARECGILTDGLAIEGPDFRNKTQREMEEIIPKLQVMARSLPLDKHTLVKHLRNDFNEVVAVTGDGTNDAPALHEADIGFAMGIAGTEVAKENADVIVMDDNFTTIVNVTRWGRSVYINIQKFVQFQLTVNVVALMLNFVSACVSGSAPLTAVQMLWVNMIMDTLGALALATEPPHDGLMKRPPIGRNAKFITGVMWRNIIGQSLYQTIVLLVLKFRGEKILKLNGPDATSILNTVIFNTFVFCQVFNEINSRDMEKINVLKGLLSSWIFLMVMASTVCFQVIIVEFLGAFAQTVPLSRDLWLTSVMIGAVSLVVAVVLKCIPVPVKNYVATHHDGYEQLPTGPELA* 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1185 1040 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 111 1017 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Mtr4g1185 1040 Pfam haloacid dehalogenase-like hydrolase 449 770 - -
Mtr4g1185 1040 ProSitePatterns E1-E2 ATPases phosphorylation site. 453 459 IPR018303 -
Mtr4g1185 1040 SFLD C1.7: P-type atpase like 433 808 - -
Mtr4g1185 1040 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 721 844 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Mtr4g1185 1040 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 203 489 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Mtr4g1185 1040 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 550 702 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Mtr4g1185 1040 SUPERFAMILY HAD-like 450 861 IPR036412 -
Mtr4g1185 1040 SMART Cation_ATPase_N_a_2 114 188 IPR004014 -
Mtr4g1185 1040 Gene3D - 166 1015 - -
Mtr4g1185 1040 CDD P-type_ATPase_Ca_PMCA-like 140 889 - -
Mtr4g1185 1040 Gene3D - 448 801 IPR023214 -
Mtr4g1185 1040 SUPERFAMILY Calcium ATPase, transmembrane domain M 116 1017 IPR023298 -
Mtr4g1185 1040 Gene3D - 15 75 - -
Mtr4g1185 1040 Gene3D - 461 661 IPR023299 GO:0000166
Mtr4g1185 1040 PANTHER CATION TRANSPORTING ATPASE 6 1024 - -
Mtr4g1185 1040 Pfam Ca2+-ATPase N terminal autoinhibitory domain 6 47 IPR024750 GO:0005516
Mtr4g1185 1040 SFLD p-type atpase 433 808 IPR044492 -
Mtr4g1185 1040 Gene3D - 134 334 - -
Mtr4g1185 1040 PRINTS P-type cation-transporting ATPase superfamily signature 282 296 - -
Mtr4g1185 1040 PRINTS P-type cation-transporting ATPase superfamily signature 451 465 - -
Mtr4g1185 1040 PRINTS P-type cation-transporting ATPase superfamily signature 654 665 - -
Mtr4g1185 1040 PRINTS P-type cation-transporting ATPase superfamily signature 676 686 - -
Mtr4g1185 1040 PRINTS P-type cation-transporting ATPase superfamily signature 756 775 - -
Mtr4g1185 1040 PRINTS P-type cation-transporting ATPase superfamily signature 780 792 - -
Mtr4g1185 1040 Pfam Cation transporting ATPase, C-terminus 841 1014 IPR006068 -
Mtr4g1185 1040 PRINTS H+-transporting ATPase (proton pump) signature 613 631 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Mtr4g1185 1040 PRINTS H+-transporting ATPase (proton pump) signature 756 772 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Mtr4g1185 1040 PRINTS H+-transporting ATPase (proton pump) signature 788 813 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Mtr4g1185 1040 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 457 666 IPR023299 GO:0000166
Mtr4g1185 1040 PANTHER CALCIUM-TRANSPORTING ATPASE 6 1024 - -
Mtr4g1185 1040 SUPERFAMILY Calcium ATPase, transduction domain A 236 332 IPR008250 -
Mtr4g1185 1040 Pfam Cation transporter/ATPase, N-terminus 115 183 IPR004014 -
Mtr4g1185 1040 Pfam E1-E2 ATPase 236 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1185 Mtr-Chr4 16630920 16644785 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1185 56 1037 Primary Pumps ATPases AT3G57330 68.159 0.0 1372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1185 K01537 - gmx:100801260 1759.19