Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1170 ATGAGAAAAGCAAATAGTTATTCTCTTCTTCTATCCTTTCTAATTCTTTCATACTTTGTGATTGAAATCCATGGAAACCAACAAGTTAAAGCTCTTGACAATCTTCACAAGGAGAAATACAAAGGAAATTCACAAATTGATAGGAGTGAATTTGAGGTACAAGAAATTGTGTATGATGATGCCATTCATTCTCAAGAGGGTCTCAAAGAGAAAGATAGGATTAAGAGTCTTCCAGGGCAACCATTGGTGAAATTCTCTCAATTTGGAGGGTATGTCAAATTGGATAAATTGGGTGGTAGAGCCTTTTACTATTACTTTGTTGAAGCTCAACATTCTAAAGAAACACTTCCCCTTCTTCTTTGGCTCAATGGAGGTCCCGGATGTTCATCTCTAGCCTATGGAGCAATGCAAGAATTGGGACCTTTCAGAGTAAACAGTGACGGCAAAACACTACACCATAATAGATACTCGTGGAACTATGCTGCAAATGTTTTGTTCTTGGAGTCACCTGTTGGAGTAGGATTTTCTTATTCAAACAAATCATCAGATTATAGTACTAATGGAGACAAGAAAACAGCTACAGATAACTATTTATTTTTGGTAAATTGGTTGGAAAGGTTTCCAGAATATAAAAATAGAGATTTCTATATTTCTGGAGAAAGTTATGCTGGACATTATGTTCCTCAACTTGGACATACCATTCTTTATCATAACAAAAAGGCAAAGACAATCATCAACCTCAAAGGAATCTTGATTGGGAATGCAGTAATCCATGATCAGACAGACTCACCAGCAATGTATGATTATCTTGCTAGCCATGCTATCATCTCAGATGAAGCAGCTTATGATATAAAAAGTGTCTGTGATTTCTCATCAGATAAACTCTCAAAGGAATGTAATGCAGTTGCTGATGAAGTTAATGAAGATCTTGCATTCATTAATTTATATAACATTTATGCTCCAGTTTGCAAAAATGACAATCTCACAGCCAAGCCCAAAAAGTACTCTATTGTGAATGATCCATGTGGTGAGTCTTATGTGTCTGCCTATCTTAATAGAAAAGATGTTCAAGAGGCCCTTCATGCTAATGTCACCAAACTCAAATATGAATGGAGTCCTTGCAGTGATGTCATTGGACATTGGGTTGATAGTTCTTCAACAGTCCTTCCAATTTTACATGAATTCCTCAATAGTGGCCTTAGGGTTTGGATTTTCAGTGGTGACACAGATGGAAGGGTTCCTGTTACTTCAACTAAGAATTCAATTAAGAAAATGAACCTTCCCATTAAAACTAGGTGGTACCCTTGGTTGGCTTATGGAGAGGTTGGTGGATATACACAAGTATACAAGGGAGACCTAACATTTGCTACAGTGAGAGAAGCAGGGCATCAAGTGCCAAGTTACCAACCAGGAAGAGCTCTTGCTTTGATTAAACATTTCTTAGATGGGACTCCTCTTCCTGCTCCCAAATTAAAATCCTAG 1482 0.3731 MRKANSYSLLLSFLILSYFVIEIHGNQQVKALDNLHKEKYKGNSQIDRSEFEVQEIVYDDAIHSQEGLKEKDRIKSLPGQPLVKFSQFGGYVKLDKLGGRAFYYYFVEAQHSKETLPLLLWLNGGPGCSSLAYGAMQELGPFRVNSDGKTLHHNRYSWNYAANVLFLESPVGVGFSYSNKSSDYSTNGDKKTATDNYLFLVNWLERFPEYKNRDFYISGESYAGHYVPQLGHTILYHNKKAKTIINLKGILIGNAVIHDQTDSPAMYDYLASHAIISDEAAYDIKSVCDFSSDKLSKECNAVADEVNEDLAFINLYNIYAPVCKNDNLTAKPKKYSIVNDPCGESYVSAYLNRKDVQEALHANVTKLKYEWSPCSDVIGHWVDSSSTVLPILHEFLNSGLRVWIFSGDTDGRVPVTSTKNSIKKMNLPIKTRWYPWLAYGEVGGYTQVYKGDLTFATVREAGHQVPSYQPGRALALIKHFLDGTPLPAPKLKS* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1170 493 ProSitePatterns Serine carboxypeptidases, serine active site. 217 224 IPR018202 GO:0004185
Mtr4g1170 493 SUPERFAMILY alpha/beta-Hydrolases 74 487 IPR029058 -
Mtr4g1170 493 Gene3D - 388 483 - -
Mtr4g1170 493 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 10 487 IPR001563 GO:0004185|GO:0006508
Mtr4g1170 493 Pfam Serine carboxypeptidase 79 483 IPR001563 GO:0004185|GO:0006508
Mtr4g1170 493 Gene3D - 342 378 - -
Mtr4g1170 493 PANTHER CARBOXYPEPTIDASE 10 487 - -
Mtr4g1170 493 Gene3D alpha/beta hydrolase 68 325 IPR029058 -
Mtr4g1170 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 154 166 IPR001563 GO:0004185|GO:0006508
Mtr4g1170 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 167 177 IPR001563 GO:0004185|GO:0006508
Mtr4g1170 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 203 228 IPR001563 GO:0004185|GO:0006508
Mtr4g1170 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 453 466 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1170 Mtr-Chr4 16217877 16224022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1170 350 486 Calmodulin-binding Proteins AT2G22960 30.657 7.05e-17 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1170 K16297 - gmx:100783864 769.615