Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1120 ATGAAGAGGTTAAGGTCAAGCGAAGATCTTCACTCGTATGGCGAAAAGAACGGTGGTGATAAGAATGGTGTGAAGGATTCATCAAATCTCAACCGTTCGTTTTCATCTACTGGTCAGAGAAGTTTTTATTATAAGCAGGAGAATGTGAGGAAGAGTTTAATTTCTTCGTCTTCTTCGTCGCGATACGAGAGGGATCGAACGGTGGAGGAAGATCGGGAAGGTTCTAGATTGGAATATTGGGGTGCTGATAGAAATTGTGGGGGTGCTGAAAGGAATAGTGGGGGTGCTGATAGAAATTTTGGGGGTGCTGAAAGGAATAGTGGGGGTGGAGATAGGAATTTGATTCATAGGTCGGAGAGTTTTTGTGGAGGGTCAAGGAGGGAGTTTCCGAAGGGGTTTCGATCGGAGAGGGATCGTTCGAGGAGGGAGGGGAGTGTGTCGTCGTGGAGGAGAGGATTGAAGGATTTTGATGAGAGTAGTAGAGGGAGTGGTGGTGGTAGTAGGGTTGAAGAGAGGGTGGTTAGGTCTCCGAAGGGTTTTTCGAGGGATGTGAAATCGCCCAGTTGGTCAAAGGATTCGGAGAGTGAGCAGTCGAAGAAGAGAAATTCTGAGTCTCCAAGGGTGTTTAGGGAGGTTAAGTCGAAATCTAAGTCGCCTTCTGTGTCTAAGGATTCGGAGAGTGAACAATCCAAGAGTGTTAGTGGTGTTGAGGTGAAGAAAAGCGAGGAGATGTTGCAACAGGTTCAGAGTGGAAGTGGTAGTGAAATGGAAGAGGGGGAGCTTGAACCTGAACCGGTCCGTGAAACTGAACTGAAACCTGCTCCTAAAGATGAAGCAGCTGGAAGTGAAATCCAGCAAACCTCTGAGGACAAACAAGCGCAAAAGAAGAAGAATGAATGCCATTCAGGTGATGCAGATGTTGTTATGGAAGAAAAACAGACCTTGTCGAGTAAGGAAGAAGCAAAATGTACGCAGGATATTGATTCTGAGGTAAAAGTTGCAGGAAAAGAAGTTTGTGAGTTGCCTAAGACTCAAGATGATCCAACTAATGAAATATCTGTTGCTGAGAGTGAGATTGGAACCACAAGTAATGTTGATGATAAGAAGAATGTGTGTTTGAACGGGGATGATACTCGTTGCAAGGAGGAAATGGAGAAGGGAACAGATAAGGGGAAGGCGATGCTTAATGAAGAGGAGCGTGAGGAGGATAACGGTGTAGGTGGTAACAAACCTGAGTCAATTGAAGGCTCAACCGAGAATGATGTTGCCGATGAAGTGAAGGGGGAAACAATGGAGAGTGTGAGTGTGATCAACAATGTGAAGGATAAAGGCAAAAGCATCTCGGTCACACCTGATGTTGCACATTCTTCAAAAGATGGCTTGTGGATTGATAGAGGATCAAATGATCTTGCAACATGCCCGGTAGATGACATGGAAGGTCCAAGCAGAAGAGGGTTCGAGCTTTTTTCTACTTCTCCTGTGAGAAAAGCAGAAAAGTCAGATAGCTTGGTTCTAAAAAAGGAGAATGATGACAGTCTTGCAATGGGCCAGCTTGACCTTTCTCTTAGCTTGCCGAATGTTCTGTTACCGATAGGAGCTCAGGAAACAGCAACGCAAGCCCCTGGATCTCCCAGTCAAGCACGGAGTGTTCAGTCTCTAAGTAATACATTTTGTACTAACTCAGATGGTTTTACTGCATCAATGTCATTTTCAGGTTCCCAATCATTATATCACAATCCAAGTTGTTCTCTAACGAAAAATTCAGTGGACTATGAACAATCTGTTGGAAAATCGGTTGGCAGTCGCCCCTTGTTCCAAGGATTTGATTGGCAAGCCCTATCTCAGCAAGGTGATCCCAAACAGAAAGAAGTTCCCTCTAGTCAGAGAACTTCGATGAATGGGAACGGTTCTCTTTACCAGCCACAAGCATCATGGGGTGTTTTAGACACTCAAGCTTTGAAAGGTCAACATTCTAGGGCTCTAGAAGGAAGCTCAAAAATGGGCAGTGGGCTTGAAAAACAATTGAGTTTTCATAAGCAAATTTCAGGACAGTCAAGACGACATGATGATGTTCGGTCTCCTACGCAGAGTGTTGGGTCTCATGACAATGGATCAAATTATAGTTTTGAGAAAAAAAGGGAAAGGAGTAGTGGTGGTCTACATCGAACTACCAGCCAGAAAGGACAAGAACAACTTCTGATGGGTGGACTTGATTTTGTTAAGACAATCATTGCTAGAATTATTTCTGAATCTGTGCCCGTGATGTCGAGAAAGTTCCATGAAATGTCTGGACAGTACATGACACATATGAAAGAGGGTATTCGGGAACTCATGCTCAATGCAGATAGCCATGGTCAGATACTTGCTTTTCAAAAAATTCTGCAGAACAGGTCTGATATAACCTTGGATGTTCTAGTGAAGTGTCATCGAGTGCAACTGGAAATTCTGGTTGCAATAAAAACTGGTTTAGCCCATTATCTTCACCTAGGTGATAACATTTCATCTAATGATTTAGCTCAAGTTTTTCTAAACTTGAAGTGTAGGAATGTATCATGTCGAAGTCAGTTGCCGGTCGATGAATGTGATTGCAAGCTTTGTGTGCAGAAGAATGGTTTTTGCAGGGAATGTATGTGTCTTGTGTGCTCTAAGTTTGACAACGCGTCGAACACTGTTAGTTGGGTTGGGTGTGATGTTTGTCTCCACTGGTGTCATACTGACTGTGGATTGCGGGAATCTTATATTAGAAATGGAAATAGTACTACTGGAACAAAAGGAACGACTGAGATGCAGTTTCATTGCATTGCTTGTGATCACCCTTCTGAGATGTTTGGCTTTGTCAAAGAGGTGTTTCAAAATTTTGCAAAAGAGTGGTCAGCCGAATATCTTTACAAGGAACTTGAATATGTGAAGAGGATCTTTTCTGCCAGCAAGGATATAAGAGGGAGGCAATTGCATGAGATTGCAGATCAAATGCTGCCAAGGCTGACAATTAAGTCCAACCTTCCTGAGGTTTTGAGACGCATCATGTCTTTTCTCTCTGATTGCGATTCTTCCAAATTAGCCATGACAACGAACTTCTCTGGAAAGGAACAAGGCAAAGAGAACAGTGTTGTAGCTGGGCCCAGCCAGGAAGCTGCCTGGCTGAAATCTATTTATTCAGATAAGGCACCTCTGTTAGAAAGACCTGCAAGCATCCTTCCAAGATTTGACCAGAATGATAAAAGGACAATGGTGCAGGAGTTGCAGTTGAGTAGTGTTCAAAAAGACTTCGGTTTTGATGAATTGGACAGTATAATAAAAATCAAACATGCAGAGGCCAAAATGTTTCAAACGCGTGCTGACGATGCTAGGAGAGAAGCTGAAGGGTTGAAGCGCATTGCCCTTGCAAAGAATGAGAAAATTGAAGAAGAGTATGTCAACCGAATCACCAAGTTACGGTTCACTGAGACAGATGAAATGCGCAAGCGAAAGTTGGAAGAACTCCATGGATTAGAGAGGGCACATCGGGAGTATTTGAACATGAAAATGAGAATGGAGTCAGAGATTAAAGATCTGTTATCCAAAATGGAAGCAACTAAAATGAACCTTGCCATGTGA 3597 0.4331 MKRLRSSEDLHSYGEKNGGDKNGVKDSSNLNRSFSSTGQRSFYYKQENVRKSLISSSSSSRYERDRTVEEDREGSRLEYWGADRNCGGAERNSGGADRNFGGAERNSGGGDRNLIHRSESFCGGSRREFPKGFRSERDRSRREGSVSSWRRGLKDFDESSRGSGGGSRVEERVVRSPKGFSRDVKSPSWSKDSESEQSKKRNSESPRVFREVKSKSKSPSVSKDSESEQSKSVSGVEVKKSEEMLQQVQSGSGSEMEEGELEPEPVRETELKPAPKDEAAGSEIQQTSEDKQAQKKKNECHSGDADVVMEEKQTLSSKEEAKCTQDIDSEVKVAGKEVCELPKTQDDPTNEISVAESEIGTTSNVDDKKNVCLNGDDTRCKEEMEKGTDKGKAMLNEEEREEDNGVGGNKPESIEGSTENDVADEVKGETMESVSVINNVKDKGKSISVTPDVAHSSKDGLWIDRGSNDLATCPVDDMEGPSRRGFELFSTSPVRKAEKSDSLVLKKENDDSLAMGQLDLSLSLPNVLLPIGAQETATQAPGSPSQARSVQSLSNTFCTNSDGFTASMSFSGSQSLYHNPSCSLTKNSVDYEQSVGKSVGSRPLFQGFDWQALSQQGDPKQKEVPSSQRTSMNGNGSLYQPQASWGVLDTQALKGQHSRALEGSSKMGSGLEKQLSFHKQISGQSRRHDDVRSPTQSVGSHDNGSNYSFEKKRERSSGGLHRTTSQKGQEQLLMGGLDFVKTIIARIISESVPVMSRKFHEMSGQYMTHMKEGIRELMLNADSHGQILAFQKILQNRSDITLDVLVKCHRVQLEILVAIKTGLAHYLHLGDNISSNDLAQVFLNLKCRNVSCRSQLPVDECDCKLCVQKNGFCRECMCLVCSKFDNASNTVSWVGCDVCLHWCHTDCGLRESYIRNGNSTTGTKGTTEMQFHCIACDHPSEMFGFVKEVFQNFAKEWSAEYLYKELEYVKRIFSASKDIRGRQLHEIADQMLPRLTIKSNLPEVLRRIMSFLSDCDSSKLAMTTNFSGKEQGKENSVVAGPSQEAAWLKSIYSDKAPLLERPASILPRFDQNDKRTMVQELQLSSVQKDFGFDELDSIIKIKHAEAKMFQTRADDARREAEGLKRIALAKNEKIEEEYVNRITKLRFTETDEMRKRKLEELHGLERAHREYLNMKMRMESEIKDLLSKMEATKMNLAM* 1199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1120 1198 Coils Coil 1175 1195 - -
Mtr4g1120 1198 CDD PHD_OBE1_like 877 936 - -
Mtr4g1120 1198 Pfam PHD - plant homeodomain finger protein 847 970 IPR032881 -
Mtr4g1120 1198 MobiDBLite consensus disorder prediction 62 79 - -
Mtr4g1120 1198 MobiDBLite consensus disorder prediction 289 324 - -
Mtr4g1120 1198 MobiDBLite consensus disorder prediction 23 61 - -
Mtr4g1120 1198 MobiDBLite consensus disorder prediction 171 224 - -
Mtr4g1120 1198 MobiDBLite consensus disorder prediction 614 641 - -
Mtr4g1120 1198 MobiDBLite consensus disorder prediction 121 158 - -
Mtr4g1120 1198 MobiDBLite consensus disorder prediction 432 453 - -
Mtr4g1120 1198 MobiDBLite consensus disorder prediction 678 729 - -
Mtr4g1120 1198 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 1198 IPR004082 -
Mtr4g1120 1198 Coils Coil 1117 1137 - -
Mtr4g1120 1198 PANTHER PROTEIN OBERON 4 1 1198 - -
Mtr4g1120 1198 MobiDBLite consensus disorder prediction 356 375 - -
Mtr4g1120 1198 MobiDBLite consensus disorder prediction 706 720 - -
Mtr4g1120 1198 MobiDBLite consensus disorder prediction 1 324 - -
Mtr4g1120 1198 Pfam Coiled-coil region of Oberon 1071 1186 IPR032535 -
Mtr4g1120 1198 MobiDBLite consensus disorder prediction 383 408 - -
Mtr4g1120 1198 MobiDBLite consensus disorder prediction 383 467 - -
Mtr4g1120 1198 MobiDBLite consensus disorder prediction 1 22 - -
Mtr4g1120 1198 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 758 780 IPR004082 -
Mtr4g1120 1198 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 797 812 IPR004082 -
Mtr4g1120 1198 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 812 827 IPR004082 -
Mtr4g1120 1198 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 838 859 IPR004082 -
Mtr4g1120 1198 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 884 904 IPR004082 -
Mtr4g1120 1198 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 957 976 IPR004082 -
Mtr4g1120 1198 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1093 1113 IPR004082 -
Mtr4g1120 1198 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1132 1154 IPR004082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1120 Mtr-Chr4 14934975 14940305 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1120 847 995 PHD Gene Family AT5G57380 25.503 2.41e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1120 - - mtr:MTR_4g039650 2216.04