Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1089 ATGAATATGGATAACCAAAGAAAGAAAAGTGTAGGGCACAAGAAGATCGAGATCAAGAAGATTGACAAAGCATCGAACAGACAAGTCACATTCTCAAAGCGAAGACAAGGTCTATTCAAAAAAGCAAGTGAACTTTGTGTCTTATGTGACGCACATGTAGCCATGGTGGTGTTTTCCCCGTCCGACAAACTATTTTGCTTTGGTCAACCCAACATCGACACAATTCTTAATAGCTACATCAACGAAACCACTGAGTTTGAGGATTCGAAGACTTCATCATATGAAGAGTACAATAGACGATATGAGGAGGCATTAAAAATGTTGGAGTCGGAGAAGAAGAAACTAGCCGATGTTCAAAATTTGAACAAAAGCGATTGGTGGAATGATTCCATTGATGATATGAGTATTGAAGAGCTTGAACAATTTATGGAATCCATTAAAGAGTTAAAGACTAACCTTAATGAACCAATGCTTTGCAGGACCATGGAATTTCTTGATCTGGATGAATGA 510 0.3804 MNMDNQRKKSVGHKKIEIKKIDKASNRQVTFSKRRQGLFKKASELCVLCDAHVAMVVFSPSDKLFCFGQPNIDTILNSYINETTEFEDSKTSSYEEYNRRYEEALKMLESEKKKLADVQNLNKSDWWNDSIDDMSIEELEQFMESIKELKTNLNEPMLCRTMEFLDLDE* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1089 169 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 20 67 IPR002100 GO:0003677|GO:0046983
Mtr4g1089 169 PANTHER MADS BOX PROTEIN 8 166 - -
Mtr4g1089 169 Gene3D - 23 114 IPR036879 GO:0003677|GO:0046983
Mtr4g1089 169 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Mtr4g1089 169 Coils Coil 94 121 - -
Mtr4g1089 169 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Mtr4g1089 169 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Mtr4g1089 169 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Mtr4g1089 169 SUPERFAMILY SRF-like 12 89 IPR036879 GO:0003677|GO:0046983
Mtr4g1089 169 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Mtr4g1089 169 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 8 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1089 Mtr-Chr4 14299682 14300191 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1089 8 150 Type I MADS-box Gene Family AT5G60440 41.139 1.41e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr4g1089 SRF-TF 2.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1089 - - cam:101502875 204.142