Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1083 ATGAAGCGTGGGAGAACCACATGGGAATCATCTTCTTCTTCTTCGGTTTCGCCGAGTCTGGAAGCGGGAATCATCAAGAAGCTTCGGTTGGAGAATTTCATGTGCCATTCCAATCATGAAACTGAGTTTGGGAGTCACGTTAATCTCATCACTGGTCAAAATGGAAGTGGTAAAAGTGCAATACTTACTGCGTTGTGTGTAGCATTTGGATGTCGAGCTAAAGGCACTCAAAGAGCATCTACTTTGAAGGATTTCATTAAAAATGGTGCTAGTAATGCTGTCATCCATGTTGAAATTCAAAATGAAGGAGAGGATGCTTTCAAGCCTGATATATATGGTGATGTTATCATTGTAGAACGTAGGATATCCGAATCCGCAAGCTCCATTACCTTGAAAGATCATCAAGGAAAGAAAGTTTGCACCCGGAAAGCAGATCTTCAGGAAATCATTGAACATTTCAATATTGATGTGGAGAATCCATGCGTGATTATGAGTCAAGACAAAAGCAGAGAATTTTTGCATTCTGGAAATAACAAAGATAAATTTAAGTTCTTCTACAAGGCCACACTTCTTCAGCAAGTCAATGATCTTCTGGAAAGCATTTCCATTGAAACAACTACTGCACGTGGAATAGTTGACGAATTAGAGGCTTCAATAAGACCTATAGAGAAGGAGCTTAACGAGCTGCAGAATAAAATTAAAACGATGGAACACGTTGAACAAATTTCCATACAGGTTGAGCAGTTAAAAAAGAAACTTGCATGGTCATGGGTTTATGACGTGGACAAGAAACTTGAGGAACAAAATGTAAAAATTGAAAAGCTGAAAAATCGGATTCCTACCTGCCAAGCTAAGATTGATAAACAACTGCATCTGCTTGAAAAATTAAGTGAAAACTGTTCTACGAAGAAAGCTGAAATTAAAAGTATGATGACATCACAAGTCAAGCAAATGAAGGAAAGTTTAAGCCGCTCTATGTCCTTGGCAAACAAAGAAGCATACGAGCTTCAGCGAGACTGCAAACACAAAATTAGTGACATACAGAAGATGGCACAACAGTTGAAAAGGCTTGAAGTACGAATGCAGGATATTCATGAGCAGAATGTGAAAAATACCCAGGCTGAAGAATCTGACATGGAGGAAAAACTGAAGGGGCTTCGAGATGAGGTTGATCATGCTAAGTCCGAATTGGATAGATTGAAAGAAGAAGAGGAGACGTTAATAAACAACAAAAATAGGCAAAAGGATGAAATCAAAAGGATTGATGATGAGATCCGAGATCATGGCAAGAAGTATAGTGAGATCATGTATAGTATTCGTAATCTTCAACAACAGCAAAGCAACAAGACCACAGCTTTTGGAGGAAACAAAGTGCTTAATCTATTGCATAATATTGAGAGATGTCATCAAAGGTTTAAGAAGCCTCCCATTGGTCCAATTGGTGCCCATCTGAAGTTGCTTAATGGTAATAAATGGGCGGTTGCTGTTGAACATGCCATTGGGAGAATGCTCAATTCCTTTATAGTGACTGATCACAAGGATTTGCATCTTTTGAAACAATGTGCGAAGGAAGTAAACTACGGTCATCTTCAAATTATTATTTATGATTTTTCAACCCCAAGGTTGACGCTACCAGAAGACATGCTTCCTAATACAAACCATCCATCAACTCTTTCCGTCTTACAATGCGATAATCACACTGTGTTTAACGTCTTAGTCGATCTGGGAAATGTTGAGAGACAAGTGCTTGTTAACGACTATAATACCGGGAAGGTTGTTGCCTTTGAAGAAAGGATCCGAAATTTGAAGGAGGTTTTCACTGTGGAAGGTTGTAAAATGTTTTCGCGAGGTCCGGTACAAACAACTCTTCCTCCAAATAAGAAGCAACGATATGGTCGTCTAAGTAGTTCTGTTGAAGGTGATATTCAGAAGCTTCGTAATGATGCATCCAATGAACAAAAAGTCGTAGATAACTATAAATGGAATAAGAGGGAGGCAGATCTCAAGCTTGAGGATCTTGATAACAAGATGAATTCTATAAAGAGACTTTGTGTAACTGCTGGAAGAACTTTTACTTCTAAGAAGCTAGCTTTGGAGATGACAATGAAAGAACAAGCTGCTAAAAGCAGCTCGACACCTTTGTCCTCAGTTGATGAGATTGTTGAAGAAATTTCAGAAATAAACAAAAAAATAAAAGAAGAGCAGGTGTTGTTGGAAGACCTTGAGCAGAGGAGGCATGAAGCAGTGGGAAAAGCAGATGATCTTAAAGGGAAATTTGACGAATTGTGTGAATCAGTGAATACTGAACTTGCTTCCCTTGAGAAAGCTGAGAGTGAACTTATGGAGATTGAAAGAGAAATAGATTCAGCAAAAAAGGCGAAGGATCATTATGATAATGTCATGAAAACCAGGGTCCTACATGATATTAAGGAGGCAGAGGAGCACTGTCTGGAGCTTACAAAAAGGCGCGAGGTGAATCTTGAGAAGGCTTCCATAATTTGCTGTCAGAATGAACTTGCTACGTTAGGAGGTTGTGATGGGGTAACCCCAGAGCAAATCAGCGGCCAATTAGAAAGTCTAAATCATACACTTAGGCGTGAGAGCCGAAGATACTCTGAATCTATTGAGGACCTGAGGATGTTGTATGCAAAAAAAGAACGAAAGATTATTAAAAGGCAGCAAGTTTACAAAACCCTTCGACAGAAACTGAATGCTTGCCAGAGGGCTTTGGAGTTTCGAAGGACAAAGTTTCAGAAAAATGCAGATAATCTCAAGCTTCAACTTTGTTGGAAATTTAACAGCCATTTGAAAAAGAAGGGAATCAGTGGAGTCATCAAAGTTGATTATGAGCAGATGACCTTATCGATTGAGGTACAGATGCCCCAAGATGCATCAAACAGGGCTGTTCGAGACACGCGGGGTCTTTCAGGTGGAGAACGGTCTTTTTCAACCTTGTGCTTTGCATTAGCCCTTCATGAAATGACAGAGTCTCCATTTAGAGCAATGGATGAGTTCGATGTCTTTATGGATGCAGTAAGCCGAAAAATTAGCATGGACACTCTGGTTGATTTTGCTGAGGCACAAGGATCCCAGTGGATATTGATCACCCCGCATGATACTAGCTTGGTGAAGGCTGGAAACAGGGTAAAGAAGATGCAAATGGCAGCTCCCCGTTCTTGA 3180 0.3991 MKRGRTTWESSSSSSVSPSLEAGIIKKLRLENFMCHSNHETEFGSHVNLITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKNGASNAVIHVEIQNEGEDAFKPDIYGDVIIVERRISESASSITLKDHQGKKVCTRKADLQEIIEHFNIDVENPCVIMSQDKSREFLHSGNNKDKFKFFYKATLLQQVNDLLESISIETTTARGIVDELEASIRPIEKELNELQNKIKTMEHVEQISIQVEQLKKKLAWSWVYDVDKKLEEQNVKIEKLKNRIPTCQAKIDKQLHLLEKLSENCSTKKAEIKSMMTSQVKQMKESLSRSMSLANKEAYELQRDCKHKISDIQKMAQQLKRLEVRMQDIHEQNVKNTQAEESDMEEKLKGLRDEVDHAKSELDRLKEEEETLINNKNRQKDEIKRIDDEIRDHGKKYSEIMYSIRNLQQQQSNKTTAFGGNKVLNLLHNIERCHQRFKKPPIGPIGAHLKLLNGNKWAVAVEHAIGRMLNSFIVTDHKDLHLLKQCAKEVNYGHLQIIIYDFSTPRLTLPEDMLPNTNHPSTLSVLQCDNHTVFNVLVDLGNVERQVLVNDYNTGKVVAFEERIRNLKEVFTVEGCKMFSRGPVQTTLPPNKKQRYGRLSSSVEGDIQKLRNDASNEQKVVDNYKWNKREADLKLEDLDNKMNSIKRLCVTAGRTFTSKKLALEMTMKEQAAKSSSTPLSSVDEIVEEISEINKKIKEEQVLLEDLEQRRHEAVGKADDLKGKFDELCESVNTELASLEKAESELMEIEREIDSAKKAKDHYDNVMKTRVLHDIKEAEEHCLELTKRREVNLEKASIICCQNELATLGGCDGVTPEQISGQLESLNHTLRRESRRYSESIEDLRMLYAKKERKIIKRQQVYKTLRQKLNACQRALEFRRTKFQKNADNLKLQLCWKFNSHLKKKGISGVIKVDYEQMTLSIEVQMPQDASNRAVRDTRGLSGGERSFSTLCFALALHEMTESPFRAMDEFDVFMDAVSRKISMDTLVDFAEAQGSQWILITPHDTSLVKAGNRVKKMQMAAPRS* 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1083 1059 Coils Coil 642 683 - -
Mtr4g1083 1059 Coils Coil 347 431 - -
Mtr4g1083 1059 Pfam RecF/RecN/SMC N terminal domain 25 1054 IPR003395 -
Mtr4g1083 1059 CDD ABC_SMC6_euk 963 1059 - -
Mtr4g1083 1059 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 13 1059 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Mtr4g1083 1059 CDD ABC_SMC6_euk 25 179 - -
Mtr4g1083 1059 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 1052 IPR027417 -
Mtr4g1083 1059 Coils Coil 258 285 - -
Mtr4g1083 1059 Coils Coil 766 800 - -
Mtr4g1083 1059 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 13 1059 - -
Mtr4g1083 1059 Coils Coil 212 242 - -
Mtr4g1083 1059 Coils Coil 717 758 - -
Mtr4g1083 1059 Gene3D - 24 242 IPR027417 -
Mtr4g1083 1059 SUPERFAMILY Smc hinge domain 430 610 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Mtr4g1083 1059 Gene3D - 760 1056 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1083 Mtr-Chr4 14160954 14183585 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1083 22 1059 Structural Maintenance of Chromosomes family AT5G07660 55.769 0.0 1140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1083 K22804 - gmx:100816916 1509.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1083 4 14160954 14183585 Mtr4g1083 4 14160954 14183585 ECH