Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1079 ATGGAGAAGAGCGATGGGAAAACCTGTGGGATTTGTGGGAAGTGGTTCTCCGGTGGGAAAGCCCTTGGAGGCCACATGAGATCTCACATGGTTCATTTGCCGATTGTTCCAAAGCTTGAAACTAATACTCAAGCTGTAGACAATTCGGCCGATTCAACCCATCGTCGAAATCAATTTGCTTCCTCACAGACTTGTCTTCCCGAAATACAGCAAACACAGAATTTCCTATCCATGAAACAAAACTTCACTGCCTCCTCTGCAAACTCAAACAGAGAAAATGAATCTGTGTCCAACCCGAAAAACCCAACCCGCAAGAGATCCAATTGCGGACGCGAACTTAATGCTGCGGCTGATACAGAAGATATGTCAAGAGATCCAGGTGTTTTGATGGTATGGGGATTTTACAAAGATGCACAAAAAAGGGAAGGGATCAAGAAACAAAAAATGAGGGAAGAAAATGGCGAAAGCAGTAGAGGTGACTCGCTTGCACAAGCAGACTCTGAAGCCAGGTTCAACTGTGAGAGGTGCGGAAAAATGTTCCGATCTTATCAAGCTCTTGGTGGGCACAGAGTATACTGCAAAAGAGACAATGATGGTGATTTAATAGATCAGAAACCTTTTCACTGCCCAAATTGCAACAAAGTGTTCAAGTCTGCTCAGGCACTCGGTGGACACAAGAGGGTACACTCTTCCCGTGCTAATGAATTTCAAAGTGTGCAACACCCGTATTGA 732 0.4481 MEKSDGKTCGICGKWFSGGKALGGHMRSHMVHLPIVPKLETNTQAVDNSADSTHRRNQFASSQTCLPEIQQTQNFLSMKQNFTASSANSNRENESVSNPKNPTRKRSNCGRELNAAADTEDMSRDPGVLMVWGFYKDAQKREGIKKQKMREENGESSRGDSLAQADSEARFNCERCGKMFRSYQALGGHRVYCKRDNDGDLIDQKPFHCPNCNKVFKSAQALGGHKRVHSSRANEFQSVQHPY* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1079 243 Gene3D Classic Zinc Finger 143 232 - -
Mtr4g1079 243 Pfam C2H2-type zinc finger 9 30 - -
Mtr4g1079 243 Pfam C2H2-type zinc finger 170 196 - -
Mtr4g1079 243 Pfam C2H2-type zinc finger 207 230 - -
Mtr4g1079 243 ProSiteProfiles Zinc finger C2H2 type domain profile. 171 190 IPR013087 -
Mtr4g1079 243 SUPERFAMILY beta-beta-alpha zinc fingers 171 229 IPR036236 -
Mtr4g1079 243 MobiDBLite consensus disorder prediction 84 122 - -
Mtr4g1079 243 ProSiteProfiles Zinc finger C2H2 type domain profile. 207 234 IPR013087 -
Mtr4g1079 243 MobiDBLite consensus disorder prediction 143 164 - -
Mtr4g1079 243 SMART c2h2final6 207 229 IPR013087 -
Mtr4g1079 243 SMART c2h2final6 7 29 IPR013087 -
Mtr4g1079 243 SMART c2h2final6 171 191 IPR013087 -
Mtr4g1079 243 ProSitePatterns Zinc finger C2H2 type domain signature. 209 229 IPR013087 -
Mtr4g1079 243 MobiDBLite consensus disorder prediction 143 157 - -
Mtr4g1079 243 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 234 IPR044303 GO:0006355
Mtr4g1079 243 SUPERFAMILY beta-beta-alpha zinc fingers 8 33 IPR036236 -
Mtr4g1079 243 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 1 234 - -
Mtr4g1079 243 ProSiteProfiles Zinc finger C2H2 type domain profile. 7 34 IPR013087 -
Mtr4g1079 243 MobiDBLite consensus disorder prediction 84 104 - -
Mtr4g1079 243 ProSitePatterns Zinc finger C2H2 type domain signature. 9 29 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1079 Mtr-Chr4 14052048 14053219 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1079 9 229 C2H2 Transcription Factor Family AT3G60580 30.952 9.81e-20 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr4g1079 zf-C2H2_6 8.3e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1079 - - cam:101511854 224.557