Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1065 ATGGAGGCTCTCGATTCCAATCCACCACCGCTCAACGATAATCCACAACACCAATCCGAAACCCTAATCCCCCAAAATGGCATCAACGGCACCACCACCACCGATAACAACGATTCACGTCCACTGATTCCAAATCAACTTCTCTCCGAAAACGGTTTAACCGGCGGCAACACCCGAAGCGGAACCGACAAAGATCAATCAGGCGGAGAAGAAGAAACAACAAGCAAACGCCGCCGTAGAAGTCGATGGGACCCACAGCCAGATTCAAACGATCAGAACGGCGAAGCCGCCACCGGGACGAAGAAAAGGAAATCCAGATGGGCGGATGACGAACCGAAACCGGTAATTCAACTTCCTGATTTCATGGGTGGTATTGAATTTGATCCTGAAATTCAAACATTGAATAGTAGATTGCTTGAGATTAGTAGAATGTTGCAATCTGGTTTGCCATTAGATGATCGTCCTGAAGGGGCTAGATCTCCTTCGCCTGAACCTATATATGATAATATGGGGATTAGGATTAATACTAGAGAGTATCGTGCTCGTGAGAGGTTTCAGAAAGAGAGACAAGAGATTATTTCTCAGATTATTAAGAAAAATCCTGCTTTTAAGCCACCTGCTGATTATAGACCACCAAAGCTTCAGAAGAAGCTTTACATACCGATGAAAGAGTATCCGGGTTATAATTTTATTGGGCTTATAATTGGGCCAAGGGGGAATACTCAGAAGAGGATGGAGAAGGAGACTGGTGCTAAGATTGTGATTCGGGGTAAAGGGTCGGTGAAAGAAGGGAGGTTGCAGCAGAAGAGGGATTTGAAACCGGATCCGTCGGAGAATGAGGATTTGCATGTTTTGGTTGAGGCGGATACGGCTGATGCACTTGAGGCTGCGGCTGGTATGGTGGAGAAGCTATTGCAGCCTGTGGATGAGGTTTTGAATGAGCATAAGAGGCAGCAACTTAGGGAGCTTGCAGCTTTGAATGGGACAATTAGGGATGAAGAGTATTGTAGGTTGTGCGGTGAGCCTGGGCATCGTCAGTATGCTTGTCCTACAAGGACTTCGACGTTTAAGAGTGAGGTTGTTTGTAAGCATTGTGGGGATGGTGGTCATCCTAGTATTGATTGTCCGGTGAAGGGTGCTACTGGAAAGAAGATGGATGATGAGTATCAGAATTTCTTGGCTGAGTTGGGTGGTACAGTTCCTGAATCTGCGATTAAGACAACTAGTACTTTGGCAATTGGTTCGGGCAGTTCTGGAAGCAATCCTCCTTGGGCTAACAATTCTGGTTCTGGTGGTAGTACACCACAAGCTGGATTAGGGGCTGGTGCAGTTAAAAAGGAAATTGATGATACAAATTTGTACATTGGGTATTTGCCACCCACTCTTGAGGATGATGGTTTGATCCAATTGTTTCAACAATTTGGTGAGATTGTTATGGCAAAAGTTATTAAGGATCGAATAACAGGTTTGAGTAAAGGATACGGGTTTGTGAAGTATGCTGATATCACAATGGCAAACAATGCAATTGTTGCCATGAATGGTTATCGCCTTGAGGGTCGAACTATTGCAGTGAGAGTTGCTGGTAAGCCTCCTCAGCCTGTTGTACCTCCAGGCCCACCTGCATCGGCTGTGCCCACTTATCCTGTTCAAAGCCAGCCAATTGGTGCCTATCCATCCCAACAATATACTGGTGGTGGTCCCATTGGGAATGCTCCTCCTGGGAGTTATGGAGGTACTCCTGTCCCATGGGGACCTCCTATTCCTCCTCCCTACAATCCTTATGCTCCTCCCCCGCCTGGATCAACTATGTATCCTCCTATGCATAGTCAACCTATGCCTCCATATGGTGTTCAATACCCACCCATGCCGACAGGTCCCCCTGGTGCCACTCCCCCACCCCCGGCTTCTGGTGAAATGCAGCAGAATTATCCTCCTGGGGTGCAGTCTGATAATAATTCATCTACTCAGTCTGTACCGACCAACATGTATGGTAACACAATGCCTTCAATGCCACCAGCAGCTCCACCAACATATCCTGCCTCTTATGGATATCCTCCTCCACCTTACTATAATGCAGTTCCTCCACCACCTCCCCCTCCTGCCCCTACTTCAGACCAATCACACAGCATTGCAAATGCGCCTTGGGCCAGTAATCATTCCGCCCCACCTCCTCTTTCGTCTGCAGATCAATCCCAGAGCATTGGAAATGTGCCTCCACCTATGCCTCCTCCTAACTCATCGGCAGAAAAGACGTCATATGGAGCTGATTCTGAGTATGAGAAATTCATGGCAGAGATGAAATGA 2304 0.4727 MEALDSNPPPLNDNPQHQSETLIPQNGINGTTTTDNNDSRPLIPNQLLSENGLTGGNTRSGTDKDQSGGEEETTSKRRRRSRWDPQPDSNDQNGEAATGTKKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQTLNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERFQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEADTADALEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESAIKTTSTLAIGSGSSGSNPPWANNSGSGGSTPQAGLGAGAVKKEIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRITGLSKGYGFVKYADITMANNAIVAMNGYRLEGRTIAVRVAGKPPQPVVPPGPPASAVPTYPVQSQPIGAYPSQQYTGGGPIGNAPPGSYGGTPVPWGPPIPPPYNPYAPPPPGSTMYPPMHSQPMPPYGVQYPPMPTGPPGATPPPPASGEMQQNYPPGVQSDNNSSTQSVPTNMYGNTMPSMPPAAPPTYPASYGYPPPPYYNAVPPPPPPPAPTSDQSHSIANAPWASNHSAPPPLSSADQSQSIGNVPPPMPPPNSSAEKTSYGADSEYEKFMAEMK* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1065 767 ProSiteProfiles Zinc finger CCHC-type profile. 362 376 IPR001878 GO:0003676|GO:0008270
Mtr4g1065 767 SMART rrm1_1 452 525 IPR000504 GO:0003723
Mtr4g1065 767 MobiDBLite consensus disorder prediction 1 121 - -
Mtr4g1065 767 Gene3D - 128 205 - -
Mtr4g1065 767 SUPERFAMILY RNA-binding domain, RBD 447 539 IPR035979 GO:0003676
Mtr4g1065 767 Gene3D K Homology domain, type 1 206 334 IPR036612 GO:0003723
Mtr4g1065 767 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 214 340 IPR036612 GO:0003723
Mtr4g1065 767 SUPERFAMILY Retrovirus zinc finger-like domains 332 378 IPR036875 GO:0003676|GO:0008270
Mtr4g1065 767 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 451 529 IPR000504 GO:0003723
Mtr4g1065 767 PANTHER BRANCHPOINT-BRIDGING PROTEIN-LIKE 29 767 - -
Mtr4g1065 767 MobiDBLite consensus disorder prediction 64 86 - -
Mtr4g1065 767 ProSiteProfiles Zinc finger CCHC-type profile. 336 350 IPR001878 GO:0003676|GO:0008270
Mtr4g1065 767 SMART kh_6 214 306 IPR004087 GO:0003676
Mtr4g1065 767 MobiDBLite consensus disorder prediction 669 704 - -
Mtr4g1065 767 PANTHER RNA-BINDING PROTEIN RELATED 29 767 IPR045071 -
Mtr4g1065 767 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 453 522 IPR000504 GO:0003723
Mtr4g1065 767 Pfam KH domain 229 277 IPR004088 GO:0003723
Mtr4g1065 767 MobiDBLite consensus disorder prediction 97 113 - -
Mtr4g1065 767 MobiDBLite consensus disorder prediction 411 440 - -
Mtr4g1065 767 MobiDBLite consensus disorder prediction 411 435 - -
Mtr4g1065 767 Gene3D - 335 387 - -
Mtr4g1065 767 ProSiteProfiles Type-1 KH domain profile. 229 301 - -
Mtr4g1065 767 Gene3D - 421 533 IPR012677 -
Mtr4g1065 767 MobiDBLite consensus disorder prediction 9 63 - -
Mtr4g1065 767 SMART c2hcfinal6 361 377 IPR001878 GO:0003676|GO:0008270
Mtr4g1065 767 SMART c2hcfinal6 335 351 IPR001878 GO:0003676|GO:0008270
Mtr4g1065 767 MobiDBLite consensus disorder prediction 641 667 - -
Mtr4g1065 767 MobiDBLite consensus disorder prediction 615 767 - -
Mtr4g1065 767 MobiDBLite consensus disorder prediction 615 639 - -
Mtr4g1065 767 MobiDBLite consensus disorder prediction 150 169 - -
Mtr4g1065 767 MobiDBLite consensus disorder prediction 705 735 - -
Mtr4g1065 767 CDD SF1_like-KH 215 331 - -
Mtr4g1065 767 MobiDBLite consensus disorder prediction 259 279 - -
Mtr4g1065 767 Pfam Splicing factor 1 helix-hairpin domain 103 210 IPR032570 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1065 Mtr-Chr4 13897792 13902046 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1065 451 657 Eukaryotic Initiation Factors Gene Family AT3G16380 25.234 3.71e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1065 K13095 - gmx:100800982 1124.38