Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1056 ATGGACATGAATTCAAATCATACTCCTGTTCTCACGGACAGTGCTCCGATAACAAATTCAAGGCTGCATTCCAATTTGTTGCCTTATTCCCATACTGGTGCAACCTTTTCACACGGTATGCTGTTGAATATCCCAAGGAAGAAGACTGGAATTCTTGAAGATGTTTTTTCTTGTGGTTGGTTGGATGCCATGAAATCATCTTCACCTCCACCGAAGTATATAACAAAGGATGTTAATCAAGGTTTTGCATCATCTGAATCTGATCCTTACTTTAACTGGCTGCTAAAATATCCATCAGCACTTGCATCTTTTGATCAAATAACAAACTTTGCAAAAGGCAAAAGAATTGCATTATTTTTGGACTACGATGGAACTCTTTCACCAATTGTGGATAATCCAGACTGTGCTTTCATGTCGGACAATATGCGTGCTGCTGTTAAAAAGGTGGCAGAGTATTTCCCAACAGCAATAATTAGCGGAAGAAGTCGCGACAAGGTGCATGAATTTGTAGGACTAACGGAACTCTATTACGCTGGTAGCCATGGAATGGACATCATTGGCCCTGTTAGACAATCTCAATCTGTGTCACATAACCACCCTAATTGCATCGTTAAGTCTACAGACAAGCAGGGCAAGAAGGTTAATTTATTCCAACCTGCTGCTGAATTCCTGCCAATGATTAATGAGGTACTTAACTCTCTCATTGAGTGTACAAGAGATATCAAAGGAGCAAAAATTGAGAACAATAAATTTTGTGTATCTGTGCATTACCGCAATGTGGATGAGAAGAGCTGGGATTTGGTGGGGCGTCGAGTTAATGATGTTCTTAAGGGCTTTCCACGTTTGCGGTTAACTCATGGTCGCAAGGTTTTAGAGGTCCGACCTGTGATTAACTGGGATAAGGGAAAAGCGGTCACTTTTTTACTCGAGTCACTTGGACTTAATAATTGTGATGATGTGCTTCCTATATATATCGGCGATGATCGCACGGATGAAGATGCATTTAAGGTTTTGAGAGAAGGAAATAAAGGTTATGGGATTCTAGTGTCTTCAGCACCAAAGGAAAGCAACGCAAGTTACTCTCTTCGTGATCCATCCGAGGTTATGGAATTTCTCAAGTCACTTGTGGTATGGAAGCAAAGCCCCTTAAAAAGCCATATATAG 1164 0.4081 MDMNSNHTPVLTDSAPITNSRLHSNLLPYSHTGATFSHGMLLNIPRKKTGILEDVFSCGWLDAMKSSSPPPKYITKDVNQGFASSESDPYFNWLLKYPSALASFDQITNFAKGKRIALFLDYDGTLSPIVDNPDCAFMSDNMRAAVKKVAEYFPTAIISGRSRDKVHEFVGLTELYYAGSHGMDIIGPVRQSQSVSHNHPNCIVKSTDKQGKKVNLFQPAAEFLPMINEVLNSLIECTRDIKGAKIENNKFCVSVHYRNVDEKSWDLVGRRVNDVLKGFPRLRLTHGRKVLEVRPVINWDKGKAVTFLLESLGLNNCDDVLPIYIGDDRTDEDAFKVLREGNKGYGILVSSAPKESNASYSLRDPSEVMEFLKSLVVWKQSPLKSHI* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1056 387 PANTHER TREHALOSE-PHOSPHATE PHOSPHATASE A 1 381 - -
Mtr4g1056 387 TIGRFAM T6PP: trehalose-phosphatase 216 376 IPR003337 GO:0003824|GO:0005992
Mtr4g1056 387 CDD HAD_TPP 117 370 - -
Mtr4g1056 387 Pfam Trehalose-phosphatase 119 366 IPR003337 GO:0003824|GO:0005992
Mtr4g1056 387 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 381 IPR044651 GO:0004805|GO:0005992
Mtr4g1056 387 SUPERFAMILY HAD-like 117 378 IPR036412 -
Mtr4g1056 387 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 118 339 IPR006379 -
Mtr4g1056 387 Gene3D - 224 386 IPR023214 -
Mtr4g1056 387 Gene3D - 116 207 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1056 Mtr-Chr4 13685798 13692010 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1056 110 375 Trehalose Biosynthesis Gene Families AT1G70290 26.148 4.72e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1056 K01087 - gmx:100819495 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1056 4 13685798 13692010 Mtr4g1056 4 13685798 13692010 ECH