Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1054 ATGGCTCGCGGGAAGGTTCAGCTAAGGAGAATTGAGAACCCGGTGCACAGGCAAGTGACTTTCTGTAAGCGCCGAGCAGGGCTTCTGAAGAAGGCTAAGGAGCTCTCTGTGCTTTGCGATGCTGAAATTGGTCTTGTCATTTTCTCCGCTCATGGAAAGCTCTATGAACTCGCCACCAAAGGAACCATGCAAGGGCTAATAGAGAAGTACTTGAAGTTCACACGAGGGACTCAACTTGAAGCTGTAACTGAAGCACGTCCTCTTGTTTTGGATGCTAAAGAGGAAACCAATGTGCTCAAGCAAGAGATCGATACGTTGCAAAAGGGTATCACGTATTTGTTTGGAGGAGGATTAGGAACTATGGCAATGGATGAGTTGCAAGTTCTTGAAAAGAACCTCGAAATCTGGATGTATCATGTTCGCTCAATGAAGATGAATATTATGTCACAAGAAATCCAAACTTTGAGGGATAAGGTGTTGGAGAATACTTCCGTCACTAACTTTGTCCCATTTGCTACTGATACTTCGTTCCCATTAATTATACAAGATGGGATTTTTCAGCTCTAG 567 0.4392 MARGKVQLRRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLVIFSAHGKLYELATKGTMQGLIEKYLKFTRGTQLEAVTEARPLVLDAKEETNVLKQEIDTLQKGITYLFGGGLGTMAMDELQVLEKNLEIWMYHVRSMKMNIMSQEIQTLRDKVLENTSVTNFVPFATDTSFPLIIQDGIFQL* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1054 188 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mtr4g1054 188 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr4g1054 188 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mtr4g1054 188 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr4g1054 188 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr4g1054 188 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mtr4g1054 188 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
Mtr4g1054 188 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 187 - -
Mtr4g1054 188 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Mtr4g1054 188 ProSiteProfiles K-box domain profile. 89 188 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr4g1054 188 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL12 1 187 - -
Mtr4g1054 188 Gene3D - 15 77 IPR036879 GO:0003677|GO:0046983
Mtr4g1054 188 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Mtr4g1054 188 Pfam K-box region 93 160 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1054 Mtr-Chr4 13647374 13653694 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1054 1 188 MADS-box Gene Family AT1G71692 57.346 2.91e-72 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mtr4g1054 K-box 1.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1054 - - gmx:100783345 291.967