Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1051 ATGACAATCATCATGGGAAAGATATTGTTAACACTATTATTGTTATCATCAATTTTCTCAATAGCCACTTCATCAAAAAGAAGATCAAGATCTTCCAACAACAACATAGATTGGTGGTGTAACCAAACCCCACACCCAGAAACATGCAAATACTACACAAAACAAACCCATTACTATCACAACAAAAGCATCAAACACAAAACAAAATTCCGCGAAATTCTCATTCATTTAGCCTTAGAGAGAGCCGTTGTAATGCGAAATATGGCGCATAATTTCGGACAAAATAGTTGGATCACCCAGAAGAAAAAATCAGTGTCACGTGATTGTTTAAAACTCTTCGACAACACAGTTTTCCATCTCAACCGTACATTTTTAGACCTCCACAAGAAAAAATCATGTTCATCATTCGATGCACAAACATGGCTAAGCACGGCCTATACAAACATCGAAACATGTCGAAATGGGGCATTGGAATTGAACATTCCAAAATTCATTGTACCAATTATGAAAGTAAACATGACACAAATCATTAGCAATGGTTTATTCGTCAATTGGGAATTCGTTAAACGTGATGGCCGTGTTCGGTACACCAACGATGTAACTGAAGAAGGGTTTCCAAGATGGTTTTCGGTTCGAGAGAGGAAACTATTGGAATCTTCTAGGGCTATTAAGGCGCATATCATTGTCGCGAAAGATGGTTCGGGCCATTTTAAGAGAGTACAAGATGCTATAAATGCTGCTGGGAGGAGAAGGTTTAAAACAAGATTTGTTATACGTGTGAAGAAAGGTGTTTATAGAGAGAATATTGTGGTTGGGAAGATGAATGATAATATTATGTTGGTAGGTGATGGAAGTAGAAATACAGTGATAACAAGTAATAGAAATGTTCAAGCTGGTTTTACTACCTATAGCTCTGCCACTGCAGGAATTGATGGTCTTCACTTCATTGCACGTGACATTACTTTTGAAAACACGGCTGGACCACGTCGTGGTCAAGCAGTGGCGCTTCGATCAGCCTCTGACCTATCTGTCTTCTACCGTTGTTCCTTTAAAGGCTACCAAGACACCCTCATGGTTCACGCACAACGTCAATTTTACAGAGAATGTTACATCTATGGCACCGTTGACTTCATCTTTGGCAACGCAGCCGTAGTTTTCCAAAACTGCATGATTCTTGTTAGAAGGCCTTTAAACGGCCAAGCAAACATGATCACGGCCCAAGGTCGTGATGACCCATTTCAAAACACTGGAATTTCGATTCACAACTCTCAGATTAGGGCCGCGCCAGATTTCAAGCCCGTTGTCGGGAAATTCAACACCTTCTTGGGCCGGCCCTGGCAAAGATACTCTAGAGTTGTGGTCATGAAATCATTCATGGATAATTTGGTCAGTCCAATGGGTTGGTCTCCATGGGGAGGTACTAATTTTGCTCAAAGCACTCTATTTTATGGAGAGTACAAGAACTTTGGGCCTGGATCATCAACAAGAAATAGAGTAAGATGGCCTGGTTATCATGTTATGAAAAGCCCAGCCCAAGCATCACCATTCACTGTTGCTACCCTCCTTGCTGGCACCACGTGGTTACCTGCTACTGGTGTACCATTCACTTCTGGCATTTAA 1620 0.4117 MTIIMGKILLTLLLLSSIFSIATSSKRRSRSSNNNIDWWCNQTPHPETCKYYTKQTHYYHNKSIKHKTKFREILIHLALERAVVMRNMAHNFGQNSWITQKKKSVSRDCLKLFDNTVFHLNRTFLDLHKKKSCSSFDAQTWLSTAYTNIETCRNGALELNIPKFIVPIMKVNMTQIISNGLFVNWEFVKRDGRVRYTNDVTEEGFPRWFSVRERKLLESSRAIKAHIIVAKDGSGHFKRVQDAINAAGRRRFKTRFVIRVKKGVYRENIVVGKMNDNIMLVGDGSRNTVITSNRNVQAGFTTYSSATAGIDGLHFIARDITFENTAGPRRGQAVALRSASDLSVFYRCSFKGYQDTLMVHAQRQFYRECYIYGTVDFIFGNAAVVFQNCMILVRRPLNGQANMITAQGRDDPFQNTGISIHNSQIRAAPDFKPVVGKFNTFLGRPWQRYSRVVVMKSFMDNLVSPMGWSPWGGTNFAQSTLFYGEYKNFGPGSSTRNRVRWPGYHVMKSPAQASPFTVATLLAGTTWLPATGVPFTSGI* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1051 539 Pfam Pectinesterase 226 524 IPR000070 GO:0030599|GO:0042545
Mtr4g1051 539 PANTHER PECTINESTERASE 5 538 - -
Mtr4g1051 539 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 185 IPR035513 -
Mtr4g1051 539 SUPERFAMILY Pectin lyase-like 221 538 IPR011050 -
Mtr4g1051 539 ProSitePatterns Pectinesterase signature 2. 371 380 IPR033131 -
Mtr4g1051 539 PANTHER PECTINESTERASE 5 538 - -
Mtr4g1051 539 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 181 IPR006501 GO:0004857
Mtr4g1051 539 SMART PMEI_2 31 183 IPR006501 GO:0004857
Mtr4g1051 539 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 183 IPR035513 -
Mtr4g1051 539 Pfam Plant invertase/pectin methylesterase inhibitor 35 181 IPR006501 GO:0004857
Mtr4g1051 539 Gene3D - 220 539 IPR012334 -
Mtr4g1051 539 CDD PMEI-like_3 38 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1051 Mtr-Chr4 13571589 13573683 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1051 21 539 Carbohydrate Esterase AT3G47400 57.278 0.0 609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1051 4 13571589 13573683 Mtr4g1051 4 13571589 13573683 ECH