Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1028 ATGGTTATGAACGAAAGACCCACTAAGCGAGTCAAAAGAAGAGTAACAGCTGATCTTTACGATTTTCTCTCATTCCCAACCGCCGGAGATGATTCTGCTGCCGCCGTGCCGTTCAGGATCGGTGTTTACCGGTTTCTGTCTGATCATGCAAGGTCTGCTTTTCCTCCTGAGCTTTTTCCGTCGCTGATGACGTGGCAGATCTTGTTTCGTGTTGGAGAGGTTGGTGATGGAGGTGATGTTTCGTCTGGTTTGGTTACTCTTGACATTGTTGAAGAGGATGTTACCAGGTCGAGGACGATTTATTGTGATCAATGTCGTGTTGTTGGATGGAGTGCTCATCCTGTATGTCGAAAGCGATATCATTTCATAATAAGGTCTGCAACTGATGCCAATGAAGCACATCAAAGACCTTGCACTAAATGTGGAACTCTTCTCCAATTATCTGAAGCAAGGTGTAACTCATGTAATTTTGACATTTCTGCTGATGATCTTGAGGAATGGTTGTATCATCAACTTGAAGAAAACAACACCCATCTTCTGCATGGTGTTGTACATGCTAATGGTTATGGTCACTTGCTTACTCTTAATGGAAGAGAAGGTGGCTCGTCGCTTCTCTCTGGATCTGATATTATGGGTTTCTGGGATAGGCTTTGTGCTGCTATGTCTGTTAGGAAGGTTACTGTGATGGATTTGTCCAAGAAATTTGGACTGGATTATCGTTTGCTTCATGCAATTGCCAGAGGGCATTCATGGTATGGTAATTGGGGTTATGAATTTGGGACTGGCTGCTATGCTCTTACCGAAGATGCATACAAGATGGCGGTAGATAACTTGTCCAACATGCCCTTGTCCTCATTATCATTCCAGGATCGAGGACCTCATAACCCCGTACAGTCTGTTATTTCTCTTTACCAGTCTTTGGCTGAAACTGAACTTCGCACAATGAAAGATCTCTTCTCCTTTTTATTGGAATTGGTTCAAAATTTTCGTAAGCCCAGGAGCGCAGAGACTGCTAATCTGCATGAACAGACCACTCCTTGTAATTTATTATGTTCATGGACGAGAAACGACGTCGAAGATGTGCAGCAGGCTTTGATCAAGGTATTGCTTGCATCAAGTGCCTGTAATGAGGCCAAATGGGTGACAAGGCAAACTCTTAAAGGGGCAGTGGGTAGGCGTATTGGATCCCCAGAGCTTCTTGACTTCGGTCTTAAGCACTTGCAAGGGAAATCAGTTGCAAAAGGAATGGTAGTTTGTTCTCGATGCAATCCCACATCTAGTGCTATTGAATTCAGATTGGGACATTGGCCTAATGGATTTAGCTCCATTGCTAGCTATCCTACCAAAGAGCAAGTGATTTCTGATTTAACATTCTTATTTAATTCAATTGTTCACCCTGAAAAAATGATCAAATATAGACCAAAGATTAATAGGAAAACAGTGGCTGATTCAGCCAGAAAGCTTCTTGACTGTAAGCAATTTATGAAGGATTACAAAATTGAGCAAATGACCACAGTGCTGCCTTCAGCTCTTAAGATCTGGTGTCATGTGAAACTCTCTGACCATCCTAAAGAAGACCACCCAACACCACCGCCAGAGTTAATTGTGCTGCCTTTGAATGCTACTAATGCTGACCTTTTGAATGAAGTCACTAGTGTTTTTCAAGAGGTATATGGAATGTACAAGAAGTTTGTTGCTGTGAAACTTCTAGGATATGGTTTAACCAGAGAACGTGAGTATACCCTAAAATTCCTTCTGGGATCAACTTATGGATCAGTTGAAGTTCAAGGAGAATGCCCTGCTAAAAATGGCTTAGCCCGATTCCGAATGGAACGAGGAACAGAAGAATGGAAAGTTGACTGCATTTGTGGTACTAAGGATGATGACGGAGAAAGGATGTTAGCATGTGATACCTGTGGTGTCTGGCTGCATACCAGATGTGCTGGAATTGACAGTGCTGATGGGATGCCTTCCAAGTTTATATGTAAGAGATGTGTTAACTCAATCCGTGTGGGAGATAACCAGGCTTGTAAATTAAACACATATTGCAGAGATGAAGCGGTGGCAACATATTCTGCACCTGTTAATTGTAATATAAAAAATGTGAATTTTGGTGTACGTTGA 2124 0.4228 MVMNERPTKRVKRRVTADLYDFLSFPTAGDDSAAAVPFRIGVYRFLSDHARSAFPPELFPSLMTWQILFRVGEVGDGGDVSSGLVTLDIVEEDVTRSRTIYCDQCRVVGWSAHPVCRKRYHFIIRSATDANEAHQRPCTKCGTLLQLSEARCNSCNFDISADDLEEWLYHQLEENNTHLLHGVVHANGYGHLLTLNGREGGSSLLSGSDIMGFWDRLCAAMSVRKVTVMDLSKKFGLDYRLLHAIARGHSWYGNWGYEFGTGCYALTEDAYKMAVDNLSNMPLSSLSFQDRGPHNPVQSVISLYQSLAETELRTMKDLFSFLLELVQNFRKPRSAETANLHEQTTPCNLLCSWTRNDVEDVQQALIKVLLASSACNEAKWVTRQTLKGAVGRRIGSPELLDFGLKHLQGKSVAKGMVVCSRCNPTSSAIEFRLGHWPNGFSSIASYPTKEQVISDLTFLFNSIVHPEKMIKYRPKINRKTVADSARKLLDCKQFMKDYKIEQMTTVLPSALKIWCHVKLSDHPKEDHPTPPPELIVLPLNATNADLLNEVTSVFQEVYGMYKKFVAVKLLGYGLTREREYTLKFLLGSTYGSVEVQGECPAKNGLARFRMERGTEEWKVDCICGTKDDDGERMLACDTCGVWLHTRCAGIDSADGMPSKFICKRCVNSIRVGDNQACKLNTYCRDEAVATYSAPVNCNIKNVNFGVR* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1028 707 SUPERFAMILY FYVE/PHD zinc finger 610 668 IPR011011 -
Mtr4g1028 707 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 686 - -
Mtr4g1028 707 CDD PHD_MMD1_like 620 665 - -
Mtr4g1028 707 ProSitePatterns Zinc finger PHD-type signature. 621 665 IPR019786 -
Mtr4g1028 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 606 670 IPR013083 -
Mtr4g1028 707 SMART PHD_3 620 666 IPR001965 -
Mtr4g1028 707 ProSitePatterns Uncharacterized protein family UPF0054 signature. 181 191 IPR020549 -
Mtr4g1028 707 PANTHER PHD FINGER PLANT-LIKE PROTEIN 1 686 - -
Mtr4g1028 707 Pfam PHD-finger 621 667 IPR019787 -
Mtr4g1028 707 ProSiteProfiles Zinc finger PHD-type profile. 618 668 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1028 Mtr-Chr4 13010353 13013636 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1028 85 665 PHD Transcription Factor Family AT5G22260 30.097 1.22e-84 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mtr4g1028 PHD 3.6e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1028 - - mtr:MTR_4g035550 1432.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1028 4 13010353 13013636 Mtr4g1028 4 13010353 13013636 ECH