Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1021 ATGACTCCAATTAATTTGGCAGGACAATTTGGTGACACAACTTACACCAAAGTTTTTGTTGGAGGATTGGCTTGGGAAACTCAAAAAGAGACTATGAAGAAGTATTTTGAGCAATTTGGTGAGATCTTGGAAGCTGTTGTTATCACTGACAAAGCCACTGGAAGATCCAAAGGCTATGGATTTGTCACTTTTCGTGAACCTGATGCTGCTATGAGAGCTTGTGTGGATGCTGCTCCAATAATTGATGGTAGAAGAGCTAACTGCAACCTTGCTTCTTTGGGTGTCCAAAGATCTAAGCCTTCAACACCAAAACATGGAGGAGGAGGAAGGAACATTAGGGTAATGGGTTCTTTCCAGACAGGATTTGGAGGAGTGGGATCAGCTTTTCCTTCAGCTGCAACCTTCCCTCATTATGCCATCCAGCAAGGGATACCTTATAATGTTTATGGGTACTCTTCTTACTCACCGGATTACAGTTACCCTACGAGCTACTATGGTATGTACGGTGGGGCAACAGCACAGTATCCTGTTTATGGAAATGGACCAGCTGGAGGGATGATGACTGGTGGTGCAGCAGCAGCAGCCTACTACCCATATCTTCAATATGGCGAAGGAACCGGCGGCGCAACTACCGGCGGCTACACTTCTGGCCAAGGTTATGGTGTTAACTACCCACCTCAAGTGTTTCAATATTCTCCAATTGCTTCAACTGGTGGGTATGCTCAGCACTATGGAACACCCATTTCTCTTGCACCTTCTCCTGCTGCCTTACCATCAGGCGTGACAATGGCTCTACAAGCTCCTATTCCTCATCGTTAG 819 0.4603 MTPINLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPIIDGRRANCNLASLGVQRSKPSTPKHGGGGRNIRVMGSFQTGFGGVGSAFPSAATFPHYAIQQGIPYNVYGYSSYSPDYSYPTSYYGMYGGATAQYPVYGNGPAGGMMTGGAAAAAYYPYLQYGEGTGGATTGGYTSGQGYGVNYPPQVFQYSPIASTGGYAQHYGTPISLAPSPAALPSGVTMALQAPIPHR* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1021 272 SUPERFAMILY RNA-binding domain, RBD 12 111 IPR035979 GO:0003676
Mtr4g1021 272 SMART rrm1_1 17 89 IPR000504 GO:0003723
Mtr4g1021 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Mtr4g1021 272 Gene3D - 7 112 IPR012677 -
Mtr4g1021 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Mtr4g1021 272 CDD RRM_RBM24_RBM38_like 16 91 - -
Mtr4g1021 272 PANTHER OS01G0876800 PROTEIN 1 267 - -
Mtr4g1021 272 PANTHER BOULE-RELATED 1 267 IPR037366 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1021 Mtr-Chr4 12896413 12905037 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1021 12 92 C2H2 Transcription Factor Family AT2G19380 43.210 1.11e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1021 - - adu:107477578 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1021 4 12896413 12905037 Mtr4g1021 4 12896413 12905037 ECH