Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1015 ATGGCCCAACAGTCATCCAGGCTTCAGCGCTTGCTTACTCTCTTGGACACTGGCTCAACCCAAGCAACAAGGTTGACTGCAGCTCGGCAGATCGGGGAGATTGCAAAATCGCACCCTCAAGATTTGACTAGTCTTCTTAAGAAGGTTTCTCAATATCTGCGAAGTAAAAAATGGGATACAAGAGTTGCAGCTGCTCATGCAATTGGGTCTATTGCCGATAATGTTAAGCACATAAGCTTGAATGAACTTATTGCTTCTGTTGTAACAAAAATGTCTGAGAGTGGGATATCTTGTAGTGTTGATGATCTGTGTGCATGGCCTTATTTACAAGCAAAAATTACAGGAAGCTCATTTAGAAGCTTTGATATGAATAAGGTGCTTGAATTTGGAGCTTTATTAGCATCAGGAGGACAGGAATATGATATTGCAAGTGATAATATAAAGAACCCGAAGGAGCGATTGGTTCGCCAGAAGCAAAATCTTCGACGTCGGTTAGGTTTGGATGTGTGCGAACAATTTATGGATATCAATGATGTAATAAGAGATGAAGATCTCATGGCATACAAATCAGATTCATATCTCAATGGCATAGATCATAAAGTTTTTACATCTTGTTCTGTACATAACATCCAGAAAATGGTTGCAAATATGGTTCCTAGTGTCAAATCAAAGTGGCCGAGTGCTAGAGAACGGAATCTTTTAAAACGCAAAGCAAAAATTAACTCTAAAGACCAAACAAAGAGCTGGTGCGAGGATGGAACAGAGCCTTCAGGTACTCAAAATTTGACCTCAAAAGGCACATGTCCTGATTCAGGAAATTATAGTAAGGCATCCGAACAAGTTAATCACGAGGAAGATGGGTTTGAGCATGATGGAGATGGACAATGGCCTTTCAGTACTTTTGTTGAGCAACTTATTATTGATATGTTTGATCCTGTTTGGGAGGTTCGGCATGGTAGCGTGATGGCATTGAGGGAGATTTTAACACACCAAGGTGCTTCAGCTGGAGTGTTTAAACAGGAATCACGCTTGGGTGGGACATCGTTTGTGGAGTTAGAAGACAAAAATATATCAAATACGTTGAAGAGAGAGAGGGACATTGATTTAAATATGCAAGTTTCAGCAGATGAGTCTGTCTTGAACTTGAAGAGACCAAAACTTGAAGACGTATCATCGACAACTTCTATGGATAGTGTGATGACTTGCAGCAATGATGGTGATATTGAAAACAGCATTAGTTCTGAAATCCAGGGATGCAATTTACCTCTGGATTATGAGAATGGGAAATTTGACGGTAGTTCTGTTGATATGAATCTGAAAACTCACTCTGACGGTTTACATGATGCATGCAAGGACTCTGCTAATATTACAGAGCAGAAGGGTTATTCTGATGACAAAATGATTACTGGAAACCCTAATGTGCTGAGAAATCTTCCTCAGAATTGTGAGCTGATGAATTTGGTTAAAGTGGCTAGAAGTTCCTGGCTTCGAAACTGTGAATTTCTTCACGACTGTGTCATACGCTTTTTGTGTGTATTGTCACTTGACCGCTTTGGAGATTATGTATCTGATCAGGTTGTTGCTCCAGTGCGTGAAACTTGTGCACAGGCATTAGGTGCTGCATTTAAGTATATGCATGCTGCACTAGTAAATGAAACATTGAACATATTGTTGAAAATGCAGTGTAGTCCAGAATGGGAGATTCGTCATGGCAGTCTTCTGGGTATCAAATATTTGGTTGCTGTGCGACAGGAGATGCTTTCCGATTTGCTTGGACGTGTTCTTCCTGCTTGTAAATCTGGCTTGGAGGACCCAGATGATGATGTCCGAGCTGTTGCCGCTGATGCTTTAATACCAGCTGCAGCAGCAATTGTTGCTTTGCAGGGTCAAACTTTGCATTCAATTGTGATGCTGTTGTGGGATATATTGCTTGACTTGGATGATTTAAGTCCATCCACTAGCAGTGTAATGAATCTGCTTGCAGAAATCTATTCCCATCAAGAGATGGTCCCAAAAATGTATAAAGTTTTTAAAATGGGCGACAAGGAAATAGAAAATGGTGCTGGTGGTTGTGGAGATGATGGAGAAGAACATCCTTTTGTACTTTCAACTTTGGCACCACGTTTGTGGCCCTTTATGAGGCACAGCATCACATCTGTCCGTTATTCAGCAATACGAACTCTGGAAAGGCTGCTTGAAGCTGGATATAAGAGAAGCATGTCTGAGCCATCCCCTGCGTCTTTTTGGCCCTCTTCTATATTTGGAGATACCCTTAGAATTGTTTTTCAGAATTTACTATTGGAAACGAATGAGGATATTTTGCAATGTTCTGAGAGAGTTTGGAGTCTCCTTGTTCAGTGTTCTGTCGTGGACCTGGAGAATGCTGCAAGCTCTTACATGACTTCCTGGATAGAACTTGCATCTACACCTTTTGGTTCTGCATTAGATGCCTCAAAGATGTTTTGGCCTGTTGCCTTTCCTCGAAAAAGTCAATTTAGAGCAGCAGCTAAAATGAGAGCTGTGAAGATTGAAAATGAATATGGCGGAGATCTTGGCCTTGAATCTATGAAATCAACTATTCCACAAGATAGAAATGGAGATGTTCCTTTGAATTCCATTAAGATAGTTGTTGGTGCTGAGGTCGACATATCAGTAACTCGTACCCGGGTAGTTACAGCAACTGCTTTGGGAACTTTTGCCTCTAAGCTTCCAGAGGGTTCTTTGAAGTATGTAATTGATCCACTATGGAGTTCATTAACCTCTCTGTCTGGTGTCCAGCGCCAGGTTGCATCTTTGGTACTTATTTCTTGGTTCAAGGAGAATAGGACCAGGAGTTTGTCTGAAAACCTCAATGTTATTCCTGCTTGCCTCAAAGATTGGTTGCTGGACTTGTTAGCATGTTCTGACTCTGCATTCCCAACAAAAGGTTCACTTCTTCCTTATGCGGAGCTTTCAAGAACTTATTCAAAGATGCGAAGTGAGGCTGCTCAATTGCTAAATGCAGTCAAGTCTTCTGGTATGTTTAGCGAGCTATTGACAACAACCAATATTGAGTTGGATAACTTGAGTGTAGATGATGCCATTGGTTTTGCATCAAAAATTCCAGCAGTGTGTAATGATAGTACTGCAAACGAATCTATAAAGAACACTATGGATGATATTGAATCGTCAAAACAGAGGCTCTTGACAACTTCTGGTTATTTGAAATGTGTTCAGAATAATTTACATGTTACGGTTACATCTGCAGTTGCAGCTGCAGTTGTGTGGATGTCTGAGTTTCCTACACGACTCAATCCCATCATTTTGCCTTTAATGGCTTCAATCAGACGAGAGCAGGAGGAAATACTGCAAATTAAGTCAGCTGAGGCTCTCGCTGAGCTAATATATCACTGTGTTTCACGTAGACCTTGCCCCAATGATAAATTAATTAGGAATATATGTGGTTTGACTTGCATGGATCCTTCTGAGACCCCTCAAGCTAAATCCATTTGTTCCATCGAGAGTATTGATGACCAAGGTCTTCTGTCTTTCAGAACTCCGGTGAATAAACAAAAGTCAAAGGTACATGTGCTGACTGGTGAGGATCGATCAAAGGTGGAGGGATTTATTAGTAGACGTGGATCTGAGCAATCATTAAGGCTTCTGTGTGAGAAGTTTGGTGTTTTGCTATTTGATAAACTTCCTAAGCTGTGGGATTGTCTTACCGAGGTTCTTAAGCCAAGTTCCTCTGAATCTCTACTTGCTGCTAATGAAGAGGAAGATACTGTAGCAATTGAGTCTGTTAGTGATCCTCAGACCTTGATTAACAATATTCAGGTTGTGCGGTCTATTGCCCCCTTGTTAAATGAGGAGCTGAAGCCAAAACTTTTGACACTTCTCCCATCTGTTTTTAAATGTGTTAAGCATTCACATGTCGCTGTTAGACTAGCTGCTTCACGCTGCATCACCTCCATGGCCCAGTCAATGATTGTGAAAGTTATGGGAGCCGTGGTTGAAAATGCTATCCCTATGTTGGAAGATGCATCATCAGTTCATGCTCGGCAAGGAGCAGGCATGTTGATTAGCTTTCTTGTTCAGGGGCTTGGTGTAGAGTTGGTCCCATACGCTCCTCTGCTGGTGGTTCCCCTTCTACGATGCATGAGTGATTGTGATCAGTCTGTCAGACAGAGTGTTACCCATAGCTTTGCTGCTCTTGTACCTTTACTTCCTTTAGCACGTGGTGTTCCACAACCAATTGGATTAGGGGAAGGTGTATCTAGAAATGCAGAAGATTTACATTTTCTGGAGCAGCTACTTGACAACTCTCATATTGAAGATTACAAGTTGTGCACTGAATTGAAAGTAACATTGAGAAGGTATCAACAGGAAGGCATAAATTGGTTAGCTTTTCTGAAACGTTTCAAACTTCATGGAATTTTATGTGATGACATGGGGCTTGGTAAGACACTTCAAGCATCAGCAATTGTGGCCTCTGAAATAGTTGAGCGTCGAACTCAAATCGGAAATGAGGATCTTCTGCCATCTTTAATTATTTGCCCGTCAACACTAGTTGGGCACTGGGCCTTTGAGATAGAAAAGTTTATTGATGTTTCAGTCATATCTAGTCTTCAGTATGTTGGTTCTGCTCAGGATCGAATGCTTCTTCGAGATAGTTTTTGCAAGCATAATGTAATTATAACATCATATGATGTTGTCCGGAAAGATATTGATTATTTGGGACAGCTGCCATGGAATTACTGCATTTTAGATGAAGGACATATAATAAAAAATGCCAAGTCTAAAGTTACTCTTGCTGTAAAGCAGTTGAAAGCCCAACACCGCTTGATATTGAGTGGGACACCAATACAGAATAACATAATGGACTTGTGGTCCCTTTTTGATTTTTTGATGCCTGGATTTCTCGGAACAGATAGACAGTTCCAAAGCACATATGGAAAACCACTTTTAGCTTCAAGAGATCCAAAGTGCTCTGCTAAGGATGCCGAAGCTGGAGCACTTGCTATGGAAGCATTGCATAAGCAGGTCATGCCTTTCCTCCTTCGGAGGACGAAGGATGAAGTCTTGTCCGATCTGCCAGAGAAAATAATTCAAGACAGATACTGTGATTTGAGCACTGTACAACTTAAACTTTACGAACAGTTTTCTGGTTCTCGTGCAAAACAAGAGGTGTCATCTATTGTAACAACAAATGAGTCAGCTGCAGGAGAAGGAAGTGGCAGTTCTACTAAAGCGTCTTCACATGTTTTCCAGGCACTCCAATACTTGCTAAAACTCTGTAGTCATCCGTTGCTTGTACTTGGTGGGAAGATTCCAGATTCACTCTCTACCATCCTTTTGGAACTGTTTCCTGCTGGTTCTGATGTCATTTCAGAACTTCACAAACTCCATCACTCTCCAAAACTAGTTGCTCTTCATGAGATTCTCGAAGAGTGTGGAATTGGAGTTGATGCTTCAAGTACTGAGAATGCTGTTGGCATTGGGCAGCATAGGGTCTTGATATTTGCTCAACATAAGGCGTTCTTGGATATAATTGAAAAAGATTTGTTTCAGACTCACATGAAAAGTGTCACATATTTGCGGCTGGATGGATCAGTTGAGACCGAGAAGCGATTTGAAATTGTAAAAGCTTTCAATTCAGATCCTACCATTGATGTCTTATTGCTTACGACTCATGTGGGCGGGCTTGGTTTGAACCTGACATCTGCAGATACCCTTGTTTTTGTGGAGCATGACTGGAATCCTATGCGTGATCTTCAGGCTATGGATAGAGCGCACAGGTTAGGTCAGAAAAAAGTAGTTAATGTTCACCGTCTGATAATGCGTGGTACTCTGGAAGAGAAAGTTATGAGTCTACAACGGTTTAAAGTGTCAGTGGCTAATGCTGTCATTAATGCGGAAAATGCTAGTTTGAAAACAATGAATACAGATCAGTTGCTTGATTTATTTGCATCAGCAGAAATCCCCAAGGGGTCTTCTGTTGCGAAGAGTTCAGAGGACAACAGTGATGGAGACCCTAAATTATTAGGCAGTGGAAAGGGAATGAAAGCAATACTTGGAGGATTGGAGGATCTATGGGACCAATCACAGTATACAGAGGAGTACAATTTGAGTCAATTTTTGGCGAAGCTTAATGGTTAA 6138 0.4123 MAQQSSRLQRLLTLLDTGSTQATRLTAARQIGEIAKSHPQDLTSLLKKVSQYLRSKKWDTRVAAAHAIGSIADNVKHISLNELIASVVTKMSESGISCSVDDLCAWPYLQAKITGSSFRSFDMNKVLEFGALLASGGQEYDIASDNIKNPKERLVRQKQNLRRRLGLDVCEQFMDINDVIRDEDLMAYKSDSYLNGIDHKVFTSCSVHNIQKMVANMVPSVKSKWPSARERNLLKRKAKINSKDQTKSWCEDGTEPSGTQNLTSKGTCPDSGNYSKASEQVNHEEDGFEHDGDGQWPFSTFVEQLIIDMFDPVWEVRHGSVMALREILTHQGASAGVFKQESRLGGTSFVELEDKNISNTLKRERDIDLNMQVSADESVLNLKRPKLEDVSSTTSMDSVMTCSNDGDIENSISSEIQGCNLPLDYENGKFDGSSVDMNLKTHSDGLHDACKDSANITEQKGYSDDKMITGNPNVLRNLPQNCELMNLVKVARSSWLRNCEFLHDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHAALVNETLNILLKMQCSPEWEIRHGSLLGIKYLVAVRQEMLSDLLGRVLPACKSGLEDPDDDVRAVAADALIPAAAAIVALQGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSHQEMVPKMYKVFKMGDKEIENGAGGCGDDGEEHPFVLSTLAPRLWPFMRHSITSVRYSAIRTLERLLEAGYKRSMSEPSPASFWPSSIFGDTLRIVFQNLLLETNEDILQCSERVWSLLVQCSVVDLENAASSYMTSWIELASTPFGSALDASKMFWPVAFPRKSQFRAAAKMRAVKIENEYGGDLGLESMKSTIPQDRNGDVPLNSIKIVVGAEVDISVTRTRVVTATALGTFASKLPEGSLKYVIDPLWSSLTSLSGVQRQVASLVLISWFKENRTRSLSENLNVIPACLKDWLLDLLACSDSAFPTKGSLLPYAELSRTYSKMRSEAAQLLNAVKSSGMFSELLTTTNIELDNLSVDDAIGFASKIPAVCNDSTANESIKNTMDDIESSKQRLLTTSGYLKCVQNNLHVTVTSAVAAAVVWMSEFPTRLNPIILPLMASIRREQEEILQIKSAEALAELIYHCVSRRPCPNDKLIRNICGLTCMDPSETPQAKSICSIESIDDQGLLSFRTPVNKQKSKVHVLTGEDRSKVEGFISRRGSEQSLRLLCEKFGVLLFDKLPKLWDCLTEVLKPSSSESLLAANEEEDTVAIESVSDPQTLINNIQVVRSIAPLLNEELKPKLLTLLPSVFKCVKHSHVAVRLAASRCITSMAQSMIVKVMGAVVENAIPMLEDASSVHARQGAGMLISFLVQGLGVELVPYAPLLVVPLLRCMSDCDQSVRQSVTHSFAALVPLLPLARGVPQPIGLGEGVSRNAEDLHFLEQLLDNSHIEDYKLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASEIVERRTQIGNEDLLPSLIICPSTLVGHWAFEIEKFIDVSVISSLQYVGSAQDRMLLRDSFCKHNVIITSYDVVRKDIDYLGQLPWNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTDRQFQSTYGKPLLASRDPKCSAKDAEAGALAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSTVQLKLYEQFSGSRAKQEVSSIVTTNESAAGEGSGSSTKASSHVFQALQYLLKLCSHPLLVLGGKIPDSLSTILLELFPAGSDVISELHKLHHSPKLVALHEILEECGIGVDASSTENAVGIGQHRVLIFAQHKAFLDIIEKDLFQTHMKSVTYLRLDGSVETEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDLQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASLKTMNTDQLLDLFASAEIPKGSSVAKSSEDNSDGDPKLLGSGKGMKAILGGLEDLWDQSQYTEEYNLSQFLAKLNG* 2046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1015 2045 CDD SF2_C_SNF 1797 1939 - -
Mtr4g1015 2045 SUPERFAMILY ARM repeat 6 1486 IPR016024 -
Mtr4g1015 2045 MobiDBLite consensus disorder prediction 251 278 - -
Mtr4g1015 2045 CDD DEXHc_Mot1 1450 1682 IPR044078 GO:0005524
Mtr4g1015 2045 Gene3D - 506 688 IPR011989 -
Mtr4g1015 2045 MobiDBLite consensus disorder prediction 244 293 - -
Mtr4g1015 2045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1430 1682 IPR027417 -
Mtr4g1015 2045 Gene3D - 881 1407 IPR011989 -
Mtr4g1015 2045 Gene3D - 1422 1681 IPR038718 -
Mtr4g1015 2045 Gene3D - 1692 2004 IPR027417 -
Mtr4g1015 2045 Pfam Helicase conserved C-terminal domain 1828 1928 IPR001650 -
Mtr4g1015 2045 Gene3D - 4 95 IPR011989 -
Mtr4g1015 2045 Coils Coil 981 1001 - -
Mtr4g1015 2045 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1462 1632 IPR014001 -
Mtr4g1015 2045 SMART helicmild6 1842 1928 IPR001650 -
Mtr4g1015 2045 Pfam Domain of unknown function (DUF3535) 780 1233 IPR022707 -
Mtr4g1015 2045 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1819 1978 IPR001650 -
Mtr4g1015 2045 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 1 1978 IPR044972 GO:0003677|GO:0016887|GO:0017025
Mtr4g1015 2045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1683 1984 IPR027417 -
Mtr4g1015 2045 SMART ultradead3 1446 1642 IPR014001 -
Mtr4g1015 2045 Pfam SNF2-related domain 1468 1764 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1015 Mtr-Chr4 12753231 12777745 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1015 1445 1983 RAD5 or RAD16-like Gene Family AT1G02670 26.910 1.04e-43 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mtr4g1015 DUF3535 8.3e-103 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1015 K15192 - gmx:100777977 3444.44