Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0999 ATGAGACTAACTCCTACCACTTCGGATACTGAGGTTTCTGGACTTGAAAAAAATATAGGACGTATCACGCAAATAATTGGTCCGGTACTCGATGTAGTTTTTCCACCAGGGAAGATGCCTAATATTTACAACGCTCTGATAGTTCAAGGTCGAGATACTGTTGGCCAAGAAATTAACGTAACTTGTGAAGTACAGCAATTATTAGGAAATAATAGAGTTAGAGCTGTAGCTATGAGTGCTACAGATGGTCTAAAGAGAGGAATGGTTGTGATTAACACGGGAGCTCCCCTAAGTGTTCCAGTCGGCGGAGCAACCCTAGGTCGAATTTTCAACGTGCTTGGAGAGCCTATTGATAATTTAGGTCCTGTAGATACTGGGACAACCTCTCCTATTCATAGATCCGCGCCTGCCTTTATACAGTTAGATACAAAATTATCCATTTTTGAAACAGGAATTAAAGTTGTAGATCTTTTAGCTCCTTATCGCCGTGGCGGAAAAATAGGACTTTTCGGTGGAGCTGGGGTAGGTAAAACAGTACTGATTATGGAATTGATCAATAACATTGCCAAAGCTCATGGAGGTGTATCCGTATTTGGCGGAGTAGGTGAGCGTACTCGTGAGGGAAATGATCTTTATATGGAAATGAAAGAATCCGGAGTAATTAATGAAAAAAATATTGCGGAATCAAAAGTAGCTCTAGTCTACGGGCAAATGAATGAACCGCCCGGAGCTCGTATGAGAGTTGGTTTAACTGCCCTAACTATGGCAGAATATTTCCGAGATGTCAATGAACAGGACGTCCTTCTATTTATCGACAATATCTTCCGTTTTGTCCAAGCCGGATCCGAAGTATCTGCCCTATTGGGCCGAATGCCTTCCGCTGTGGGTTATCAACCCACCCTGGGTACTGAAATGGGTACTTTACAAGAACGAATTACTTCTACCAAAGAAGGGTCTATAACTTCTATTCAAGCAGTTTATGTACCTGCAGACGATTTGACCGATCCTGCTCCTGCCACGACATTTGCACATTTGGATGCTACTACTGTACTATCAAGAGGATTAGCTTCCAAAGGTATCTATCCAGCAGTCGATCCTTTAGATTCAACGTCAACCATGCTCCAACCTCGGATCGTTGGTGAAGAACATTATGAAACTGCGCAAAGGGTTAAACAAACGTTACAACGTTACAAAGAACTTCAGGACATTATAGCTATTCTTGGGTTGGACGAATTATCCGAAGAGGATCGTTTAACCGTAGCAAGAGCACGAAAAATTGAACGTTTCTTATCCCAACCTTTTTTCGTAGCAGAAGTATTTACAGGTTCCCCAGGGAAATATGTTGGTCTAGCAGAAACAATTAGAGGGTTTAAATTGATTCTTTCTGGAGAATTAGATAGTCTTCCTGAACAAGCCTTTTATTTGGTGGGTAATATCGATGAAGCTACTGCGAAGGCTGCGAACTTGTAA 1470 0.4184 MRLTPTTSDTEVSGLEKNIGRITQIIGPVLDVVFPPGKMPNIYNALIVQGRDTVGQEINVTCEVQQLLGNNRVRAVAMSATDGLKRGMVVINTGAPLSVPVGGATLGRIFNVLGEPIDNLGPVDTGTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEKNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTEMGTLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDSLPEQAFYLVGNIDEATAKAANL* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0999 489 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 151 371 IPR000194 GO:0005524
Mtr4g0999 489 PANTHER ATP SYNTHASE 1 488 - -
Mtr4g0999 489 SMART AAA_5 163 355 IPR003593 -
Mtr4g0999 489 CDD ATP-synt_F1_beta_C 378 485 - -
Mtr4g0999 489 CDD ATP-synt_F1_beta_N 18 97 - -
Mtr4g0999 489 Gene3D - 97 373 IPR027417 -
Mtr4g0999 489 Hamap ATP synthase subunit beta [atpB]. 17 489 IPR005722 GO:0015986|GO:0045261|GO:0046933
Mtr4g0999 489 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 376 IPR027417 -
Mtr4g0999 489 Gene3D - 17 96 - -
Mtr4g0999 489 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 374 487 - -
Mtr4g0999 489 PANTHER F0F1-TYPE ATP SYNTHASE, BETA SUBUNIT 1 488 - -
Mtr4g0999 489 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 18 96 IPR036121 GO:0046034|GO:1902600
Mtr4g0999 489 TIGRFAM atpD: ATP synthase F1, beta subunit 19 489 IPR005722 GO:0015986|GO:0045261|GO:0046933
Mtr4g0999 489 CDD F1-ATPase_beta 96 376 - -
Mtr4g0999 489 ProSitePatterns ATP synthase alpha and beta subunits signature. 362 371 IPR020003 GO:0005524
Mtr4g0999 489 Pfam ATP synthase alpha/beta family, beta-barrel domain 22 94 IPR004100 GO:0046034|GO:1902600
Mtr4g0999 489 Gene3D - 374 489 IPR024034 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0999 Mtr-Chr4 12654829 12656300 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0999 22 428 Primary Pumps ATPases(2) AT1G20260 26.364 1.70e-28 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0999 K02112 - vvi:4025008 905.205