Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0990 ATGGGACAAAAAATACATCCGCTTGGTTTCAGACTTGGTACAACTCAAAATCATGATTCTATTTGGTTTGCACAACCAAGAAATTATTCCGAGAATCTAAAAGAAGATAAAATAATACGAGATTGTATCAAGAATTATATACAAAAAACCCCCGGTGTCGAGGGAATTGGACGAATAAAGATTAAAAAAACAATCGATCAGATTCAAGTCATAATCTATATGGTACTTCCAACGTTATTAACGGAGGGTAAGCCTCGAAGAATCGAAGAATTACAGACTAATGTACAAAAAAAACTTAATTGTGTGACGCGAAAAATTAACATTACAAGTACAAGAATTCCAAATGCTTATAGCGACCCTAATATTCTTGCAGAATTTATAGCTGGACAATTAAAGAATAGAATTTCGTTTAGGAAAGCAATCAAAAAAGCTATTGAATTAGCTGAACAGGCAGGTACAAAAGGAGTTCAAGTACAAATTGCGGGACGTATCGACGGAAAAGAAATTGCACGTGTCGAATGGATTAGAGAAGGTAGGGTTCCTCTACAAACCATTCGAGCTAAAATTGATTATTGTTCCTATCCAGTTCGAACTATTTATGGGGCACTTGAGCCCGCTTGGATCACATCTAGACAAATAGAAGCAGGGCGACGGGCAATGTCACGAAATGTTCGCCGAGGTGGGAAAATATGGGTACGCATATTTCCAGACAAACCTGTTACAGTAAGACCTACCGAAACGCGTATGGGTTCGGGAAAAGGATCTCCCGAATATTGGGTAGCTGTCGTTAAACCCGCCGATAATAGCGGAGCCCGCGAATTGATGTGTATTCGAATCATAGGAGCTAGTAATCGACGGTATGCTTATATTGGTGACATTGTTGTTGCTGTAATCAAAAAAGCAGTACCAAATTCATCTTTAGAAAGATCTGAAGTGATCAGGGCTGTAATTGTACGTACTTGTAAAGAACTAAAACGTAGTAATGGTATAATAATAAAGTATGATGATAATGCGGCGGTTCTCATTGATAAAGAAGGAAATCCAAAAGGAACTCGAATTTTTTCCGCAATAGCCCGAGAATTGAGACAGTTAAATTTCACTAAAATAGTTTCATTAGCACCCGAGGTATTATAA 1134 0.3774 MGQKIHPLGFRLGTTQNHDSIWFAQPRNYSENLKEDKIIRDCIKNYIQKTPGVEGIGRIKIKKTIDQIQVIIYMVLPTLLTEGKPRRIEELQTNVQKKLNCVTRKINITSTRIPNAYSDPNILAEFIAGQLKNRISFRKAIKKAIELAEQAGTKGVQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYPVRTIYGALEPAWITSRQIEAGRRAMSRNVRRGGKIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPADNSGARELMCIRIIGASNRRYAYIGDIVVAVIKKAVPNSSLERSEVIRAVIVRTCKELKRSNGIIIKYDDNAAVLIDKEGNPKGTRIFSAIARELRQLNFTKIVSLAPEVL* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0990 377 CDD Ribosomal_L16_L10e 202 265 IPR016180 GO:0003735|GO:0005840|GO:0006412
Mtr4g0990 377 Hamap 30S ribosomal protein S3 [rpsC]. 1 217 IPR005704 GO:0003735|GO:0006412
Mtr4g0990 377 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 3 209 - -
Mtr4g0990 377 TIGRFAM rplP_bact: ribosomal protein uL16 187 265 IPR000114 GO:0003735|GO:0006412|GO:0019843
Mtr4g0990 377 ProSitePatterns Ribosomal protein L16 signature 2. 248 259 IPR020798 GO:0003735|GO:0005840|GO:0006412
Mtr4g0990 377 PANTHER 30S RIBOSOMAL PROTEIN S3, CHLOROPLASTIC 3 209 - -
Mtr4g0990 377 SUPERFAMILY Ribosomal protein L16p/L10e 202 265 IPR036920 GO:0003735|GO:0005840|GO:0006412
Mtr4g0990 377 Pfam Ribosomal protein L16p/L10e 202 265 IPR016180 GO:0003735|GO:0005840|GO:0006412
Mtr4g0990 377 ProSitePatterns Ribosomal protein L14 signature. 315 341 IPR019972 -
Mtr4g0990 377 ProSitePatterns Ribosomal protein L16 signature 1. 225 236 IPR020798 GO:0003735|GO:0005840|GO:0006412
Mtr4g0990 377 CDD 30S_S3_KH 2 114 - -
Mtr4g0990 377 TIGRFAM rplN_bact: ribosomal protein uL14 263 377 IPR005745 GO:0003735|GO:0006412|GO:0015934
Mtr4g0990 377 SUPERFAMILY Ribosomal protein L14 260 377 IPR036853 GO:0003735|GO:0005840|GO:0006412
Mtr4g0990 377 SUPERFAMILY Ribosomal protein S3 C-terminal domain 115 202 IPR036419 -
Mtr4g0990 377 PRINTS Ribosomal protein L16 signature 208 219 IPR000114 GO:0003735|GO:0006412|GO:0019843
Mtr4g0990 377 PRINTS Ribosomal protein L16 signature 224 253 IPR000114 GO:0003735|GO:0006412|GO:0019843
Mtr4g0990 377 PRINTS Ribosomal protein L16 signature 254 283 IPR000114 GO:0003735|GO:0006412|GO:0019843
Mtr4g0990 377 Gene3D - 17 113 IPR015946 -
Mtr4g0990 377 Gene3D Ribosomal protein L10e/L16 201 263 IPR036920 GO:0003735|GO:0005840|GO:0006412
Mtr4g0990 377 Hamap 50S ribosomal protein L14 [rplN]. 242 377 IPR000218 GO:0003735|GO:0005840|GO:0006412
Mtr4g0990 377 SMART Ribosomal_L14_2 261 377 IPR000218 GO:0003735|GO:0005840|GO:0006412
Mtr4g0990 377 Pfam Ribosomal protein L14p/L23e 262 377 IPR000218 GO:0003735|GO:0005840|GO:0006412
Mtr4g0990 377 TIGRFAM rpsC_bact: ribosomal protein uS3 1 204 IPR005704 GO:0003735|GO:0006412
Mtr4g0990 377 Gene3D - 116 200 IPR036419 -
Mtr4g0990 377 ProSiteProfiles Type-2 KH domain profile. 43 114 IPR004044 GO:0003723
Mtr4g0990 377 Pfam Ribosomal protein S3, C-terminal domain 127 202 IPR001351 GO:0003735|GO:0006412
Mtr4g0990 377 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 2 109 IPR009019 GO:0003723
Mtr4g0990 377 Gene3D Ribosomal protein L14 264 377 IPR036853 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0990 Mtr-Chr4 12601278 12605503 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0990 261 377 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 35.537 6.95e-14 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0990 K02982 - gmx:3989335 333.183