Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0989 ATGGATATATCCATATATTTCAGACTTATATTTTTTAAAATAATAAAAATGGCAAAATCTATACCAAAAATTGGTTCACGTAAAAATGGACGTATTGGTTCGCGTAAACATCCTCGTAAAATACCAAAGGGAGTTATTTATGTTCAAGCTAGTTTCAACAATACCATTGTGACTGTTACAGATGTACGAGGTCGGGTGATTTCTTGGTCCTCTGCCGGTTCGTGTGGATTCAAGGGTACACGAAGGGGGACACCATTTGCCGCTCAAACCGCAGCAGCAAATGCTATTCGAACAGTAGTAGATCAAGGCATGCAACGAGCCGTAGTCATAATAAAAGGTCCCGGTCTAGGAAGAGATGCGGCATTAAGAGCTATTGCTAGAAGTGGTATACTATTAAGATTTATACGGGATGTAACCCCTATCCCACATAATGGATGTAGGGCTCCTAAAAAAAGACGTGTGTAA 465 0.4 MDISIYFRLIFFKIIKMAKSIPKIGSRKNGRIGSRKHPRKIPKGVIYVQASFNNTIVTVTDVRGRVISWSSAGSCGFKGTRRGTPFAAQTAAANAIRTVVDQGMQRAVVIIKGPGLGRDAALRAIARSGILLRFIRDVTPIPHNGCRAPKKRRV* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0989 154 ProSitePatterns Ribosomal protein S11 signature. 122 144 IPR018102 -
Mtr4g0989 154 PANTHER 30S RIBOSOMAL PROTEIN S11, CHLOROPLASTIC 17 153 - -
Mtr4g0989 154 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 17 153 IPR001971 GO:0003735|GO:0005840|GO:0006412
Mtr4g0989 154 Hamap 30S ribosomal protein S11 [rpsK]. 16 154 IPR001971 GO:0003735|GO:0005840|GO:0006412
Mtr4g0989 154 Pfam Ribosomal protein S11 44 153 IPR001971 GO:0003735|GO:0005840|GO:0006412
Mtr4g0989 154 TIGRFAM uS11_bact: ribosomal protein uS11 36 151 IPR019981 GO:0003735|GO:0005840|GO:0006412
Mtr4g0989 154 SUPERFAMILY Translational machinery components 40 154 - -
Mtr4g0989 154 Gene3D Ribosomal protein S11 27 154 IPR036967 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0989 Mtr-Chr4 12600247 12600941 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0989 44 144 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 38.182 9.60e-14 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0989 K02948 - csin:14412458 244.202