Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0980 ATGGTAACCATTCGTGCAGATGAAATTAGTAAAATTATCCGTGAACGTATTCAGCAATATAATACCGAAGTAAAAATTGTAAATACAGGTACTGTACTTCAAGTAGGCGACGGCATTGCTCGTATTTATGGTCTTGATGAAGTAATGGCAGGTGAATTAGTCGAATTTGAAGAGGGTACTGTAGGGATTGCTTTGAATTTGGAATCCAAAAATGTTGGTGTTGTATTAATGGGTGATGGTTTGCTGATACAAGAGGGAAGTTCGGTAAAAGCAACAGGAATAATTGCTCAGATACCGGTAAGTGAGGGTTATTTGGGTCGTGTTGTAAATGCCCTAGCTAAACCTATTGATGGTAGAGGAGAAATTTCAGCTTCGGAATCTCGGTTAATCGAATCTCCCGCTCCCGGTATTATTTCCAGACGTTCCGTGTATGAGCCTCTTCAAACGGGACTTATTGCTATTGATTCTATGATCCCTATAGGGCGTGGCCAGCGAGAATTAATTATTGGGGACAGACAAACAGGTAAAACAGCAGTAGCAACAGATACAATTCTCAATCAACAGGGACAAAATGTAATATGCGTTTATGTAGCTATTGGTCAAAAAGCATCTTCTGTGGCTCAAGTGGTAACTACTTTACAAGAAAGAGGGGCAATGGAGTACACTATTATAGTGGCTGAAACAGCAAATTCTCCAGCTACATTACAATACCTCGCACCTTATACAGGTGCAGCTCTGGCTGAATATTTTATGTACCGTGAACGTCACACTTTAATCATTTATGACGATCCCTCAAAACAAGCACAGGCTTATCGCCAAATGTCTCTTCTATTACGAAGACCACCAGGTCGCGAAGCGTATCCCGGAGATGTTTTTTATTTACATTCTCGTCTTTTGGAAAGAGCCGCTAAATTAAGTTCTCAGTTAGGTGAAGGAAGTATGACTGCTTTACCAATAGTTGAGACCCAATCAGGAGATGTTTCAGCTTATATTCCTACTAATGTAATTTCCATTACAGATGGCCAAATATTTTTATCTGCCGATCTATTCAATGCTGGAATCAGACCAGCTATTAATGTGGGTATTTCCGTTTCCAGAGTTGGATCGGCGGCTCAAATTAAAGCCATGAAACAGGTAGCTGGTAAATTAAAATTGGAATTGGCACAATTCGCAGAATTAGAAGCTTTTGCACAATTTGCTTCTGATCTCGATAAAGCTACGCAAAATCAATTGGCAAGAGGTCGACGATTGCGCGAGTTGCTTAAACAATCCCAATCAGCTCCTCTCACTGTGGAAGAACAGATAATAACTGTTTATACTGGAACGAATGGTTATCTTGATTCATTAGAAATTTATCTCGTACGGAAATTTCTCGTTGAGTTAAGGGCTTATTTAAAAACGAATAAACCTAAATTTAACGAAATCATATCTTCTACCAAGACATTCACTGGGGAAGCAGAAGCCCTTTTGAAGGAAGCTATTCAGGAACAGATGGAACTCTTTTTACTTCAGGAACAGGTAGAAAAAATTAATTAA 1536 0.3926 MVTIRADEISKIIRERIQQYNTEVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTVGIALNLESKNVGVVLMGDGLLIQEGSSVKATGIIAQIPVSEGYLGRVVNALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIIVAETANSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDPSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGRRLRELLKQSQSAPLTVEEQIITVYTGTNGYLDSLEIYLVRKFLVELRAYLKTNKPKFNEIISSTKTFTGEAEALLKEAIQEQMELFLLQEQVEKIN* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0980 511 CDD ATP-synt_F1_alpha_C 376 501 IPR000793 GO:0015986
Mtr4g0980 511 Hamap ATP synthase subunit alpha [atpA]. 2 502 IPR005294 GO:0015986|GO:0045261|GO:0046933
Mtr4g0980 511 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 150 365 IPR000194 GO:0005524
Mtr4g0980 511 CDD ATP-synt_F1_alpha_N 28 93 - -
Mtr4g0980 511 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 11 94 IPR036121 GO:0046034|GO:1902600
Mtr4g0980 511 ProSitePatterns ATP synthase alpha and beta subunits signature. 356 365 IPR020003 GO:0005524
Mtr4g0980 511 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 373 500 - -
Mtr4g0980 511 Pfam ATP synthase alpha/beta family, beta-barrel domain 29 93 IPR004100 GO:0046034|GO:1902600
Mtr4g0980 511 Gene3D - 373 501 IPR038376 -
Mtr4g0980 511 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 1 506 - -
Mtr4g0980 511 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 371 IPR027417 -
Mtr4g0980 511 Pfam ATP synthase alpha/beta chain, C terminal domain 372 496 IPR000793 GO:0015986
Mtr4g0980 511 CDD F1_ATPase_alpha 95 368 IPR033732 GO:0032559
Mtr4g0980 511 PANTHER ATP SYNTHASE SUBUNIT ALPHA, CHLOROPLASTIC 1 506 - -
Mtr4g0980 511 PIRSF F_ATPase_subunit_alpha 2 504 IPR005294 GO:0015986|GO:0045261|GO:0046933
Mtr4g0980 511 TIGRFAM atpA: ATP synthase F1, alpha subunit 4 498 IPR005294 GO:0015986|GO:0045261|GO:0046933
Mtr4g0980 511 Gene3D - 3 94 IPR023366 -
Mtr4g0980 511 Gene3D - 95 372 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0980 Mtr-Chr4 12573314 12574929 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0980 87 371 Primary Pumps ATPases(2) AT4G38510 30.464 4.05e-30 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0980 K02111 - gmx:121173224 907.131