Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0959 ATGGGTGTTGCTGCTAATGGGGGGAGCTATAAGACCACCCATTATCCATATAAGCTGAACTTCCAATTTGGAACAAAATGTTTGCCATTGTGTGGTGCATTAGTGAGTGGTTCTGATTTTAAGTTTGTTCCAATTTCTGACATAGTAGGTGGTTCTTATGATTGTGACTACTTGGTTGATGTTATTGGAATGTTGACGGGTGTTGGCACAGAGAGAGAATATGAACGCAATGGCAGTGCTACCAAACTCAATGTCATTGCCATGGAAGCTGATGGATACAAGCTTCAGTGCACTTTGTTTGGGACTTATGTGGATGAGTTGAACACGTTTTTGGCAACTGGTGAAACTGCTAATGTTGTAGTGTCTATTCAACTAGCTAAGGTGAAGGTTTTTCAAGACAATATACACATTCAAAATTGTCTGAATTGTACCCGGTTGAAGTTTAATCCTGTTTGTGTTGAGGGTACTGCCTTTAAGAACAGGATGATTGAAAATGATGATACACCATCCCCTCTTACTCAGCTAGCTGTGGAACCAAGTATTGACCCTTTGCAAGATTTTTTATTCAACACTCCAAGAACAACTATTCAGGGATTGAAGGATTCTCAGCAGGAGGGGATGTATGTTGTGCTTGGAACTGTTAAACAGATTGTGAACCCTGAGAATTGGTACTACACGGCCTGTATGTGCAACAAATCTGTATATCCTGCTGAGGGGATGCACTTCTGCGAGAAGTGTAATAGGCATGTGGTCAAAGTGTTTCCAAGGTATTCTATAAAGGTGCGAGTTGTGGATGATAGTGATTGTGCAACCTTTGTTTTGTTTGACCGTGATGCAACAATGTTGTTCAATAAAAGTTGTGCTGACATTTTGGAAACACATAGGGCTGACGAGGGTGTGCTTCCAACTGAGATTGCTGCATTGGTCAACTGCACATACCTGTTCAAGGTTGAATTCAAAACTGCTATCAGTCCTAGATTTGAGCAATCATTTAGGGTGAAGAAAGTGTGCACTGATGGGGTGATTATCAACCAATTTAAGGCAAAGTGGGCTAAGGAAGAAGCAACCTTTATAAAAAATACCAATGAGATGGGGTCTTTGAGTTCTCTGTTGGACAAGGGGAAGGATGTGTTAGTGGTTGGTTCATCAAGTGTCCAATCACATGACCTTGGAAGTTTGAGCGAAACCATTGATAAAGACAAAAACATCATTGTTGAGGGAACACCTATTGGAATATCTGAAGATCTGTTGCCTAAATTTTCTTCTGTTGCGGTTGACCTTGATGTTGGTGCATCAAAGAAAGTATCTAACTGCTGTTTGGTCAAATCAACTACACGCAAAATTGTCAAAAGAGTTTTACCTCAACCTGAAATTAATGAAGTTGAGGAAATCAACCTTCCCATCAAATTGCTCAAGAGGAACATTAAGATTGAAAAAATTTAG 1443 0.4012 MGVAANGGSYKTTHYPYKLNFQFGTKCLPLCGALVSGSDFKFVPISDIVGGSYDCDYLVDVIGMLTGVGTEREYERNGSATKLNVIAMEADGYKLQCTLFGTYVDELNTFLATGETANVVVSIQLAKVKVFQDNIHIQNCLNCTRLKFNPVCVEGTAFKNRMIENDDTPSPLTQLAVEPSIDPLQDFLFNTPRTTIQGLKDSQQEGMYVVLGTVKQIVNPENWYYTACMCNKSVYPAEGMHFCEKCNRHVVKVFPRYSIKVRVVDDSDCATFVLFDRDATMLFNKSCADILETHRADEGVLPTEIAALVNCTYLFKVEFKTAISPRFEQSFRVKKVCTDGVIINQFKAKWAKEEATFIKNTNEMGSLSSLLDKGKDVLVVGSSSVQSHDLGSLSETIDKDKNIIVEGTPIGISEDLLPKFSSVAVDLDVGASKKVSNCCLVKSTTRKIVKRVLPQPEINEVEEINLPIKLLKRNIKIEKI* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0959 480 SUPERFAMILY Nucleic acid-binding proteins 39 154 IPR012340 -
Mtr4g0959 480 SUPERFAMILY Nucleic acid-binding proteins 191 344 IPR012340 -
Mtr4g0959 480 Gene3D - 37 170 IPR012340 -
Mtr4g0959 480 CDD RPA1_DBD_B_like 60 150 - -
Mtr4g0959 480 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 3 291 - -
Mtr4g0959 480 PANTHER REPLICATION FACTOR A 1, RFA1 3 291 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mtr4g0959 480 Pfam Replication factor-A C terminal domain 209 322 IPR013955 -
Mtr4g0959 480 Gene3D - 188 340 IPR012340 -
Mtr4g0959 480 CDD RPA1_DBD_C 202 320 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0959 Mtr-Chr4 12344487 12348561 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0959 33 334 Core DNA Replication Machinery Family AT4G19130 23.438 9.90e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0959 - - mtr:MTR_4g036240 966.837