Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0943 ATGCAACCTGTTTCTGGTGGTGGTGGTGGTGGTTTGACACGGTTTAACTCAACTCCGGCGAGTTGGTTAGAATCGTTTATTCTTAAAGAAGAAGATGAAGTTGATGAAAGACAACAAGATCACAGCTTAAGTTTTACTCAACTGCTTTCTAATAACAACGTTGCTGCTGGACCTGGACCTGGACCTTCAACTCCTGAGTCTCATCCATATTTATCTGACTATTACTCTTCACCACTTACTCCTACTTCTGCCAATGTTGCTAATAATCCTTTCACTCAGGGAGTTGAGGATAGTGGTATAGCAATTGACCTTAAAATGGACAAGATTTTAGAGGATTCAGTTCCTTGTAAGATTCGGGCAAAGCGTGGATTTGCTACTCATCCAAGGAGTATTGCTGAAAGGGTTCGGAGGACTCGTATTAGTGATCGCATAAGAAAACTTCAAGAACTTGTGCCAAATATGGATAAGCAAACAAATACTGCAGAGATGTTAGATGAAGCGGTAGCTTATGTCAAGTTTCTACAAAATCAAATTGAGGAACTATCAGAACAACAAAGGAGATGTAAATGCACAATTCCCGAGTAA 585 0.4017 MQPVSGGGGGGLTRFNSTPASWLESFILKEEDEVDERQQDHSLSFTQLLSNNNVAAGPGPGPSTPESHPYLSDYYSSPLTPTSANVANNPFTQGVEDSGIAIDLKMDKILEDSVPCKIRAKRGFATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTAEMLDEAVAYVKFLQNQIEELSEQQRRCKCTIPE* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0943 194 Pfam Helix-loop-helix DNA-binding domain 129 175 IPR011598 GO:0046983
Mtr4g0943 194 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 124 174 IPR011598 GO:0046983
Mtr4g0943 194 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 188 - -
Mtr4g0943 194 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 126 191 IPR036638 GO:0046983
Mtr4g0943 194 Coils Coil 164 191 - -
Mtr4g0943 194 SMART finulus 130 180 IPR011598 GO:0046983
Mtr4g0943 194 Gene3D - 125 193 IPR036638 GO:0046983
Mtr4g0943 194 PANTHER TRANSCRIPTION FACTOR BHLH117-RELATED 8 188 - -
Mtr4g0943 194 CDD bHLH_AtbHLH_like 129 182 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0943 Mtr-Chr4 12128114 12132425 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0943 10 194 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09180 46.842 2.10e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr4g0943 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0943 - - aprc:113865701 211.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g0943 4 12128114 12132425 Mtr4g0943 4 12128114 12132425 ECH