Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0896 ATGGTTAGAACTAAGGTTAAACTTGCCTTCATTGTCAACGATGCTGCAAGGAAAGCAGCATACAAGAAAAGGAAGAAGAGTCTGTTCAAAAAGGTTGTTGAACTTAGCACCCTCTGTGGTATTGAGGCTTGTGCCATAGTGTATGGCCCTTATGAGCCTCATCCTGAGATTTGGCCATCACCAGAAGGTGTCCAATCTGTGCTCTCAAAATTCATGACAATGCATGAGTTCCAGAAGTGCAATAAAAAGATGGACCATGAGACTTTCATGACACATAGGGTTTTGAAGGCTGAAGAGAAATTGATGAAACAAAGAAAAGATAATAGGGAGCAAGAGATGACATTACTCATGACTCAATGTCTTAATGAAGGTAAAGTTGTGCACGACAATTTGCCAACAGATGATTTGAGTGATCTTTCTTGGTTGATTGACCATAATTTGAAGGACATTGGTAGACGTTTGGAATCATCGAGTTTGGCTTGA 483 0.4017 MVRTKVKLAFIVNDAARKAAYKKRKKSLFKKVVELSTLCGIEACAIVYGPYEPHPEIWPSPEGVQSVLSKFMTMHEFQKCNKKMDHETFMTHRVLKAEEKLMKQRKDNREQEMTLLMTQCLNEGKVVHDNLPTDDLSDLSWLIDHNLKDIGRRLESSSLA* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0896 160 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 4 156 - -
Mtr4g0896 160 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Mtr4g0896 160 PANTHER MADS BOX PROTEIN 4 156 - -
Mtr4g0896 160 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr4g0896 160 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr4g0896 160 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Mtr4g0896 160 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677|GO:0046983
Mtr4g0896 160 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr4g0896 160 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Mtr4g0896 160 Coils Coil 94 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0896 Mtr-Chr4 11580946 11581428 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0896 1 155 Type I MADS-box Gene Family AT5G48670 54.839 2.77e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr4g0896 SRF-TF 2.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0896 - - mtr:MTR_4g032260 308.145