Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0888 ATGACTAGAAGAAAAGTTAAACTTGCCTTCATTGTGAATGATGCTGCAAGGAAAGCAACATACAAGAAAAGAAAGAAGGGTCTATTGAAAAAGGTTGCTGAACTTAGCACCCTTTGTGGAATCGATGCATGTGCCATGGTTTATGGCCCTTATGAGCTTCAACCTGAGATTTGGCCATCACCAGAAGGGGTCCAATCTGTGCTCTCAAAATTCATGGCACTGCACGAGTTCCAAAAGTGCAAGAAAATGATGAACCAAGAAACTTTCTTGACACAAAGTGTTTTGAAGGCTGAAGAGAAACTAAAGAAACAAAGAAAAGAAAATAGGGAACAAGAGATGACAATAATCATGTCTCAATGTCTCAATGAAGGTAGAGTTGTGCACGACAATATGTCAACAATGGATATGAGTTATCTTGCTTGGTTGATTGACCATAAATTGAAGGACGTTGCTAGACGTTTGGAAGCATGGGATAACAATGATCAAAATCAAATCATGGCTATTCAAAACAAAGTCCAACTCGAAATGGCGGCAACAGTACCACCACCACCACCTCTAGCACCATCTATTAATAATGATGACATTATGCAAAGTCAATTATTGATGGACTCAATGGTGGCTGGTAATGTGACAGAGACAGTGCCATTTGGTGAGGTCAATTCTGGAGTCTGGTCTGATTTACTTCCTTGA 690 0.3986 MTRRKVKLAFIVNDAARKATYKKRKKGLLKKVAELSTLCGIDACAMVYGPYELQPEIWPSPEGVQSVLSKFMALHEFQKCKKMMNQETFLTQSVLKAEEKLKKQRKENREQEMTIIMSQCLNEGRVVHDNMSTMDMSYLAWLIDHKLKDVARRLEAWDNNDQNQIMAIQNKVQLEMAATVPPPPPLAPSINNDDIMQSQLLMDSMVAGNVTETVPFGEVNSGVWSDLLP* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0888 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr4g0888 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr4g0888 229 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Mtr4g0888 229 SUPERFAMILY SRF-like 2 93 IPR036879 GO:0003677|GO:0046983
Mtr4g0888 229 Coils Coil 94 114 - -
Mtr4g0888 229 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Mtr4g0888 229 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 163 - -
Mtr4g0888 229 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mtr4g0888 229 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr4g0888 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Mtr4g0888 229 PANTHER MADS BOX PROTEIN 2 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0888 Mtr-Chr4 11471199 11471962 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0888 1 160 Type I MADS-box Gene Family AT5G48670 55.000 5.04e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr4g0888 SRF-TF 2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0888 - - mtr:MTR_4g032260 237.269