Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0877 ATGATGGAATCCTGCAATTGTATTGAGCCACAATGGCCAGCAGATGATTTATTGATGAAATACCAATACATATCAGATTTCTTCATTGCCCTTGCTTATTTCTCGATCCCACTCGAGCTTATCTACTTTGTTAAGAAATCTGCAGTATTTCCATATAGATGGGTCCTTGTTCAGTTTGGTGCCTTCATAGTTCTATGTGGAGCAACACATCTAATAAATTTATGGACCTTCACAATTCATACAAGAACCGTAGCAATTGTAATGACCACCGCCAAGGTTTTAACCGCTGTGGTATCGTGTGCCACTGCCCTTATGCTTGTACATATTATTCCCGATCTATTAAGTGTTAAAACTAGAGAATTATTTTTGAAGAACAAGGCTGCAGAGCTCGATAGAGAAATGGGCTTGATTCGTACACAGGAAGAAACTGGTCGACATGTTAGGATGTTGACTCATGAGATTAGAAGCACTCTTGATAGACATACAATACTGAAAACGACTCTTGTTGAACTTGGTAGAACTCTTGGGTTAGAGGAATGTGCGTTATGGATGCCGACACGTACCGGTTTGGAGCTTCAACTTTCTTACACATTGCGACAGCAGAACCCTGTTGGATATACAGTACCTATTAATCTTCCTGTGATCAACCATGTATTTAGTAGCAACCGTGCAGTTAAAATTTCATCGAATTGCCCAGTTGCTAGATTACGACCTCATGCTGCAAAATACATGCCTGGAGCAGTAGTTGCTATTCGGGTTCCTCTCCTAAATCTTTCTAATTTTCAAATATATGATTGGCCTGAGGTTTCAACTAGAAGCTATGCTTTGATGGTTTTGATGCTTCCATCTGATAGTGCTAGACAGTGGCATGTACATGAGTTAGAGCTCGTCGAGGTAGTTGCTGATCAGGTAGCTGTTGCTCTTTCTCATGCTGCAATCTTAGAAGAGTCGATGAGGGCAAGGGATCAACTTATGGAGCAGAATGTTGCACTTGATATGGCAAGAAGAGAAGCAGAAACTGCGATTCATGCTCGCAATGACTTTTTGGCTGTTATGAATCACGAGATGAGAACTCCGATGCATGCAATTATTGCACTCTCTTCATTGATGCAGGAAACAGATCTGACTGCTGAGCAACGTCTAATGGTGGAAACAATACTGAAAAGCAGCAATTTATTAGCTACACTCGTCAACGATGTTTTGGATCTTTCACGGCTTGAAGATGGCAGTTTTCAACTTGAAATATCAACATTTAACCTTCATTCATTGTTTAGAGAGGTCCTTAACTTGATTAAACCTGTTGCATCTGTTAAAAAGCTGTCACTCACTTTACATTTCGCATCAGATTTGCCGGTGCATGCAATTGGTGATGAAAAGCGTCTCATGCAAATTCTTCTCAATGTTGTTGGTAATGCTGTTAAGTTCACAAAAGAAGGCAGCATTTCCATCACCGTGGTTGTTGTAAAGCCTGAATCCTTCCGAGATATTAGATTTCCTGATTTCCTACCAGTACCAAGTGATAGCCACTTTTATTTGCGAGTACAGGTAAAAGATTCAGGATCAGGAATCAATCCACAAGACATCCCAAAGTTATTCACTAAGTTTGCACAAAACCAAACATTAGGAACAAAAAATCCTGTTGGAAGTGGGCTTGGCCTTGCAATTTGTAAAAGGTTTGTGAATCTCATGGAAGGGCATATTTGGATTGAAAGTGAAGGTATTGGTAAAGGATGTACAGTCACTTTTATTGTAAAACTTGGAATCGCGGACCGACCAAATGAATTTAAACTACCTTACAAACCTAAAGCTTCAGTAAATCATGGATCTACAAACATTTCTGGTCTCAAAGTTCTCGTCATGGATGATAATGGGGTGAGCAGGTCAGCGACAAAGGGACTTCTTATCCATTTAGGATGCGATGTCACAACTGTTAGCTCAAGCGAAGAATGCCTGCGTGTTGTTTCTTTGGAACACAAAGTCGTCTTTATGGATGTTTGTGCAGGGTTAGATGGTTATGAATTAGCGGTTCGTATACAAGAGAAGTTCACAAAACGTCAAGATAGACCGCTTATAGTTGCTCTTACCGGAAACACAAACAAGTTGACCAAAGAGAACTGTTTGAGAGCTGGTGTGAATGGCGTAGTTTTAAAACCTGTTTCTGTTGAGAAAATGAACGGTGTTTTAACAGAACTCTTGGAGCGTCGGTTTGTGTTTGAAACAATTTAA 2226 0.4016 MMESCNCIEPQWPADDLLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFTIHTRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPTRTGLELQLSYTLRQQNPVGYTVPINLPVINHVFSSNRAVKISSNCPVARLRPHAAKYMPGAVVAIRVPLLNLSNFQIYDWPEVSTRSYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDQLMEQNVALDMARREAETAIHARNDFLAVMNHEMRTPMHAIIALSSLMQETDLTAEQRLMVETILKSSNLLATLVNDVLDLSRLEDGSFQLEISTFNLHSLFREVLNLIKPVASVKKLSLTLHFASDLPVHAIGDEKRLMQILLNVVGNAVKFTKEGSISITVVVVKPESFRDIRFPDFLPVPSDSHFYLRVQVKDSGSGINPQDIPKLFTKFAQNQTLGTKNPVGSGLGLAICKRFVNLMEGHIWIESEGIGKGCTVTFIVKLGIADRPNEFKLPYKPKASVNHGSTNISGLKVLVMDDNGVSRSATKGLLIHLGCDVTTVSSSEECLRVVSLEHKVVFMDVCAGLDGYELAVRIQEKFTKRQDRPLIVALTGNTNKLTKENCLRAGVNGVVLKPVSVEKMNGVLTELLERRFVFETI* 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0877 741 PIRSF Ethylen_sen_hybr_HK 1 738 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Mtr4g0877 741 SMART HKATPase_4 456 588 IPR003594 -
Mtr4g0877 741 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 456 586 IPR003594 -
Mtr4g0877 741 SUPERFAMILY GAF domain-like 159 320 - -
Mtr4g0877 741 SMART gaf_1 159 318 IPR003018 GO:0005515
Mtr4g0877 741 CDD HATPase_EvgS-ArcB-TorS-like 461 586 - -
Mtr4g0877 741 ProSiteProfiles Response regulatory domain profile. 616 732 IPR001789 GO:0000160
Mtr4g0877 741 SUPERFAMILY CheY-like 612 734 IPR011006 -
Mtr4g0877 741 PRINTS Bacterial sensor protein C-terminal signature 512 526 IPR004358 GO:0016310|GO:0016772
Mtr4g0877 741 PRINTS Bacterial sensor protein C-terminal signature 530 540 IPR004358 GO:0016310|GO:0016772
Mtr4g0877 741 PRINTS Bacterial sensor protein C-terminal signature 547 565 IPR004358 GO:0016310|GO:0016772
Mtr4g0877 741 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 398 586 IPR036890 -
Mtr4g0877 741 CDD HisKA 342 405 IPR003661 GO:0000155|GO:0007165
Mtr4g0877 741 SMART HisKA_10 344 409 IPR003661 GO:0000155|GO:0007165
Mtr4g0877 741 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 330 410 IPR036097 GO:0000155|GO:0007165
Mtr4g0877 741 Gene3D - 137 309 IPR029016 -
Mtr4g0877 741 Gene3D - 609 741 - -
Mtr4g0877 741 SMART REC_2 615 728 IPR001789 GO:0000160
Mtr4g0877 741 ProSiteProfiles Histidine kinase domain profile. 351 588 IPR005467 -
Mtr4g0877 741 Pfam GAF domain 159 308 IPR003018 GO:0005515
Mtr4g0877 741 Gene3D - 409 593 IPR036890 -
Mtr4g0877 741 Pfam His Kinase A (phospho-acceptor) domain 345 409 IPR003661 GO:0000155|GO:0007165
Mtr4g0877 741 PANTHER ETHYLENE RECEPTOR 1 2 738 - -
Mtr4g0877 741 Gene3D - 310 408 - -
Mtr4g0877 741 Pfam Response regulator receiver domain 617 724 IPR001789 GO:0000160
Mtr4g0877 741 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 2 738 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0877 Mtr-Chr4 11203044 11207894 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0877 2 739 Miscellaneous Gene Families AT1G66340 80.135 0.0 1214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr4g0877 GAF 6.1e-16 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0877 K14509 - gmx:100795799 1310.43