Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0856 ATGTCTCAATCTCAAGGTTGTTGTTCCAGTAGCAGCAGTGGTAACAGATCTGATGCTTCTGGAGTAGCTGAATTGAAGCTGTATAGAGCTTTTATATTCTCTGTACCAATTTTCTTCACTTTGATTCTTCTTTTTCTTTTTTATGTTTTTTATTTGAGACCAAGAAGGGTTGATTGGTCTTCTATTAGGATGAGGTCTGTTTCTGTGCTGCAACATCATCATAACAACAATGCCACCTCCACTTCTGATTTGGGATTGAAGAAAGAATTGAGAGAGATGTTGCCTATTATTGTATACAATGAAAGCTTCTCTGTCAAAGATACACAATGCTCAGTATGTCTTTTGGACTACCAACCAGAAGACAGACTTCAACAGATACCTGCATGCGGCCATACATTTCACATGAGCTGCATTGATCTTTGGCTTTCCAGCCACAGTACCTGCCCGCTTTGCCGTTTGTCCCTACTACCTACTGCGAAATCTTCGACAGAAATATCCGAAATGCAGGCCACAAGCAATGAAGAAATGGAGATGCAACAGAGCGATGAAGAAACACTAGCCATGGAATTCTCTGACTCAAGATCTACTAGACATCTAGAAACCAGTGTCATTCAAAATGTCTCTGGAGAAGCTGCGATCGATGATCACCGCATTGAAGTTGAAGAGCGAAACAATCATTAG 681 0.4082 MSQSQGCCSSSSSGNRSDASGVAELKLYRAFIFSVPIFFTLILLFLFYVFYLRPRRVDWSSIRMRSVSVLQHHHNNNATSTSDLGLKKELREMLPIIVYNESFSVKDTQCSVCLLDYQPEDRLQQIPACGHTFHMSCIDLWLSSHSTCPLCRLSLLPTAKSSTEISEMQATSNEEMEMQQSDEETLAMEFSDSRSTRHLETSVIQNVSGEAAIDDHRIEVEERNNH* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0856 226 CDD RING-H2_EL5_like 109 152 - -
Mtr4g0856 226 SMART ring_2 110 151 IPR001841 -
Mtr4g0856 226 SUPERFAMILY RING/U-box 94 157 - -
Mtr4g0856 226 PANTHER RING-H2 FINGER PROTEIN ATL7-LIKE 12 192 - -
Mtr4g0856 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 159 IPR013083 -
Mtr4g0856 226 Pfam Ring finger domain 109 152 IPR001841 -
Mtr4g0856 226 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 12 192 - -
Mtr4g0856 226 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0856 Mtr-Chr4 10972761 10975803 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0856 17 185 C3H Transcription Factor Family AT4G10150 54.802 8.29e-64 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0856 K19039 - gmx:100794211 252.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g0856 4 10972761 10975803 Mtr4g0856 4 10972761 10975803 ECH