Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0837 ATGGAGCCTTTGGATCATCAAACTAGTACGTCAGCGGGTTCATTTGATTCTATGTTGGAAGAACTTGAATCAGCCGAAGAAAATATACGAAACCGAATCATACACCTTGAAGCAATTACTTCGAGAGCGAGGCAGCGTCGGGGGTTGCCGCCGAGTTCCTCTCGGATTCAGGTAACCAATGTTATAGGAGAAACTGCAACAGCAGGTGATGTTCAAGGCGAAGAACGGAGGGAGGAGCGGAATGATGCTGGTCAGGAGGAAGGGATAGTTGAAAGTGTGAAAGGGGGGAAAAGGAAAAGTTCGCATTTGATAGCAAAAGCTCTAGGGATGGAAGAGATTGATAATGGTAAAGTGGAGGAGAGTAGTGGGAATTTCTTTGATTGTAATATTTGTTTGGATATTGCAAGAGATCCTGTTTTGACATGTTGTGGTCATTTGTTTTGTTGGCCGTGTTTCTATCAGTTATCGTATGCCTATTCAAAAGCGAAGGAATGTCCTGTTTGTAAAGGAGAGGTTACTGAATCGGGTATTATTCCAATATATGGGCATGGAAATGGCGGCGGTGATTGTCAGATGGAAATGAAAGAAGCCGGTTTAAGAGTTCCTCCTCGACCTAAGGCACCTAGAGTTGAGAGTATTAGACAGAAGTTGCTAACCCAAGGAGCATCTTCTTCTTCTATTGTCCAAAGTATTCGGCGGTTTCAGAACCGAATTGGTGGATTTGGAGAGCAAGTTCAGTTAGAAAGCCCTACTAGTACCACACCTGATAGAAACAATGGTTTGCCTGTTCAGTCTCGCACGCAGACCGACAATAATGAACATGGTGGTTCTCAACAGGTTTCAAGGTTGCTAGAGCAAGGAGCTTCTTCGTTTTCGTCACTTTCATCAGCATTAAATTCTGCCATGGATTCTGCTGAAAGATTAGTCCAGGACCTTGAGTCATATATCAATGGTCACAATACAGGAGGAAGCAGAGAGCAAAATCCTCCTGCTGTTACTAGAAATTCAACTTTAGGTGTTGCTGCTACAAACCAGTCAGAGAGTCGTGCTCGAGATGTTGATCTGACCAATTCTGTAGCTGCCGCAGCTTCTGTTTCTCCTTTAAGTAGGAATGTTGATAATGTTGATAATGTTGCTGTTACAGGCTCACAAATTCATACAACTGATAGAAATGTACAGGTTAGTTCGCTAGACCCTTCTTCATCTAGAAGTAGAAGAGGAAATCGCGCTTCAAGACAAGTTTCAAATGAACCAAGAAGAAGAAGAAGACTGCGATGA 1278 0.4311 MEPLDHQTSTSAGSFDSMLEELESAEENIRNRIIHLEAITSRARQRRGLPPSSSRIQVTNVIGETATAGDVQGEERREERNDAGQEEGIVESVKGGKRKSSHLIAKALGMEEIDNGKVEESSGNFFDCNICLDIARDPVLTCCGHLFCWPCFYQLSYAYSKAKECPVCKGEVTESGIIPIYGHGNGGGDCQMEMKEAGLRVPPRPKAPRVESIRQKLLTQGASSSSIVQSIRRFQNRIGGFGEQVQLESPTSTTPDRNNGLPVQSRTQTDNNEHGGSQQVSRLLEQGASSFSSLSSALNSAMDSAERLVQDLESYINGHNTGGSREQNPPAVTRNSTLGVAATNQSESRARDVDLTNSVAAAASVSPLSRNVDNVDNVAVTGSQIHTTDRNVQVSSLDPSSSRSRRGNRASRQVSNEPRRRRRLR* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0837 425 MobiDBLite consensus disorder prediction 391 425 - -
Mtr4g0837 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 198 IPR013083 -
Mtr4g0837 425 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 7 354 - -
Mtr4g0837 425 SMART ring_2 128 168 IPR001841 -
Mtr4g0837 425 MobiDBLite consensus disorder prediction 70 87 - -
Mtr4g0837 425 SUPERFAMILY RING/U-box 123 181 - -
Mtr4g0837 425 MobiDBLite consensus disorder prediction 46 66 - -
Mtr4g0837 425 MobiDBLite consensus disorder prediction 391 409 - -
Mtr4g0837 425 CDD RING-HC_AtRMA_like 126 170 - -
Mtr4g0837 425 Coils Coil 19 39 - -
Mtr4g0837 425 Pfam Zinc finger, C3HC4 type (RING finger) 127 174 - -
Mtr4g0837 425 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 7 354 IPR045103 GO:0005783|GO:0006511|GO:0061630
Mtr4g0837 425 MobiDBLite consensus disorder prediction 242 279 - -
Mtr4g0837 425 MobiDBLite consensus disorder prediction 245 279 - -
Mtr4g0837 425 MobiDBLite consensus disorder prediction 43 87 - -
Mtr4g0837 425 ProSiteProfiles Zinc finger RING-type profile. 128 169 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0837 Mtr-Chr4 10742616 10746788 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0837 107 238 C3H Transcription Factor Family AT3G58030 51.095 3.52e-37 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0837 K10666 - gmx:100793230 395.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g0837 4 10742616 10746788 Mtr4g0837 4 10742616 10746788 ECH