Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0835 ATGCAACCAAGAGCAAGTGCTGTAGACGTTATCCGTTTTAGCGCATCTAGTACACCTAGCAATTCAAGTGGAGGATCTGAAGCAGATGATATTGAGTCAAAAGGTGATGTTTACATATGGGGAGAGGTTTTTGCAGATGGATTTCCTTCAAAGACAGATGTGTTGACCCCTAGGCTGTTAGAGTCAACTGTTGTTCTTGATGTTCGTGACATTGTGTCCGGTACACATCATCTTGCTATAGTAAGCAGAGAAGGAAAGGTTTTTACTTGGGGTGAAGAATCTGGGGGAAGACTTGGTCATGGAATTGATAAAGATTTTGGTAAGCCTCATCTAGTTGAGTTTCCTGATGTTGTTACTTTGGATATTGTTGCATGCGGAGAATTTCATACAAGTGCCGTGTCTAAATGCGATAATTTTTTTACATGGGGTGATGGTACACATAATGTTGGACTTCTTGGACATGGTAATGAGATTAGTCACTGGATACCAAAGAGTGTCAACGGCTTTTTAGATGGACTTCGTGTCGTATCTGTTGCATGTGGATCATGGCATTCAGCATTGGCAACGTCAAATGGAAAATTGTTTACATTTGGTGATGGAACATTTGGTGTTTTGGGCCATGGTGATCAAGAGAGTGTAATGTATCCGAAGGAAGTACAGTTATTAAGTGGACTCAAGACAGTTAAGGTTGCTTGCGGAGTATGGCACACTGCAGCTATTATCGAGGTTGCTTTTCAATCTGGTTCAAATGCTTCATCATGGAAGCTTTTCACATGGGGTGACGGTGACAAATTTCGTTTAGGCCATGGAAACAAAGATATGTACCTGAAACCAACGCGTGTTTCACCCCTTATTGAATATAATTTCCAGCAGATAGCATGTGGACACACTATGACTGTTGCTCTCACTACATCTGGTCATGTATTTACAATGGGAAGCACGGAAAATGGTCAATTAGGAAATCCAAATGCTGCTGGAAAAGTACCTACTTTAGTTCAAGATAAGTTGCTTGGGGAATTTATTGAGGAAATATCATGTGGAGCACATCATGTTGCCGCTGTGACATCAAGAAGCGAATTATATACATGGGGAAAAGGTTCTAATGGAAGACTAGGACATGGTGACACAGACGATAGAAAATCTCCTACACTTGTGCTAGCCTTGAAAGATAGGCATTTGAAAAATATCTCATGTGGTTCAAACTTCACATCTTGTGTATGTAACCAAAAATACGTCAGTGGAACCGACCAGTCTGTTTGCTTTGGTTGTAGACAACCATTTGGTTTAACAAGAATACGGCACAATTGTAATAACTGTGGATTGGTTTTCTGTCATAATTGTAGTTCTAAAAAGGCAATCAAAGCTGCAATGGCTCCAACATTAGATAAACCTCATCGTGTGTGTGATACCTGTTATACTAAGCTTAAAGTTGTTGACACCAATGATCCTTCCAAGTTTAATGGAAAAGCTGTTCCTTCACATTGTTCCACAACTGCTTATGAAAGATTAGACCAAGGTATTATAAGGTCTAAAAGAACTCTCTTTTCTTCTACTACTGAACCAGTGAAATACCTTGAAATTAGGAATCATAAGCCTGGAACTGAACATGATTGTACTTCTTTTGTAAGAGCTTCTTTAGTTCCGTCTCTTTTGCAATTGAAAGATATCACATTTCCAAGTTCACTGAGTTCTATTCCTAGTGTTGCAAAGCCTTCTACACCCCCTAGTTCATCACAAAGTTCCACATCACCAAACAGATCAAGCCCTTCTCCACCCCTTATCAATCCAAGATTTTCTGGTGGTATTGTCAATAGTTTGAGAAGGACTAATGATGTTCTGAACCAACGAGTCTCGGATTTGCAGAGCCAAATTCGAAGTTTGGAGCAGAAAAGTGAAATGAGAGATGTGGAAATTCAGAAACTTCAGAAAAAAGCTACTGAAGCCATTGCCATGGTTGCAGTGGAATCTTCTAGTCATACAGAAGCAAAAGAGTTTATTGAATCTACAAAACATCAGTTGAAGGAAATGACTGAGAAGCTACCGGCAGATATTCCGGAAAGTAATATGTTGAGTACTATCCAAACTCGAGTTGAAGATTTTCTAAAAGAATTTTCGGAATCTGAATTAGAAAATATCGGACCAGCAGATAATATGTTGAGTACTATCCAAACTCGAGTTGACAAATCTGCCGCAGATAATGACTCGTCTAAATTAGAAAATATCGGACCAGCAGAACATGCTGTCATTGTAGGAGCTGATTCTTGTCTAGGTCAATCAAAGTTAGAGGTTTTGCAACATGCAATTGATATATCTACCTCAAATAGTGGCAATTTTGAACTAGAAGATCGTAGAATAGAAAGCAATGCTAATGTTGTAGGAGTTGACCATTGTCAAAATGAAGGAAATTTTGTTGAAGAAATTAATAAACCAACGTTGGAGTCTGAGCAACGTAATTCAACTGATACAACTATCTCAGATAGTGAGACTTCTAAACCGCAAGAGCACATGCATGAAAAAATTGATGAGACTGCAAAAGTTGATCAATCTGAGTCTGAACAAAATGTTCGTCAAGAAACTAATGGATCGTGTAAATTTAGTGTTGGAGAAGAGGTGCCACCCCAAAACTCCGAAAATAGTTCAACATCACTGGAGTCTGAGCAACGTAATTCAACCGATACAACTATCTCAGATAGTGAGATTTCTAAACCTCAAGAGCACATACCTGAAAAAATTGATGAGACTGCAAGAGTTGATCAATCTGAGTCTGAAAAAAATATTCGTCAAGAAAGTAATGGATCGTGTGAATTTAGTGTTGGAGAAGAGGTGTCACCCCAAAACTCCGAAAATAGTTCAACATCGCTGGACAGTTCAAGACATGAGAGACCGCCAGAAACACAATTCTTTGAAAAATTTCAATCTGGTGTTTATGCGTTGCTCACGCTACGGGCTGATGGAATCAAAATATTTAAAAGAGTTAAATTCAGTAAGAGAAGGTTCACTGACACTCAAGCAGAAGAATGGTGGAGGCAAAACAAAGGTAGGGTTCTTAGGAAATACTGTCCAGTACATCAAAATAATAATGGATCATGTAACATTACACCAAATGTTAAAGAAAATATTGAGTCATTGCCTTCCTAA 3138 0.3875 MQPRASAVDVIRFSASSTPSNSSGGSEADDIESKGDVYIWGEVFADGFPSKTDVLTPRLLESTVVLDVRDIVSGTHHLAIVSREGKVFTWGEESGGRLGHGIDKDFGKPHLVEFPDVVTLDIVACGEFHTSAVSKCDNFFTWGDGTHNVGLLGHGNEISHWIPKSVNGFLDGLRVVSVACGSWHSALATSNGKLFTFGDGTFGVLGHGDQESVMYPKEVQLLSGLKTVKVACGVWHTAAIIEVAFQSGSNASSWKLFTWGDGDKFRLGHGNKDMYLKPTRVSPLIEYNFQQIACGHTMTVALTTSGHVFTMGSTENGQLGNPNAAGKVPTLVQDKLLGEFIEEISCGAHHVAAVTSRSELYTWGKGSNGRLGHGDTDDRKSPTLVLALKDRHLKNISCGSNFTSCVCNQKYVSGTDQSVCFGCRQPFGLTRIRHNCNNCGLVFCHNCSSKKAIKAAMAPTLDKPHRVCDTCYTKLKVVDTNDPSKFNGKAVPSHCSTTAYERLDQGIIRSKRTLFSSTTEPVKYLEIRNHKPGTEHDCTSFVRASLVPSLLQLKDITFPSSLSSIPSVAKPSTPPSSSQSSTSPNRSSPSPPLINPRFSGGIVNSLRRTNDVLNQRVSDLQSQIRSLEQKSEMRDVEIQKLQKKATEAIAMVAVESSSHTEAKEFIESTKHQLKEMTEKLPADIPESNMLSTIQTRVEDFLKEFSESELENIGPADNMLSTIQTRVDKSAADNDSSKLENIGPAEHAVIVGADSCLGQSKLEVLQHAIDISTSNSGNFELEDRRIESNANVVGVDHCQNEGNFVEEINKPTLESEQRNSTDTTISDSETSKPQEHMHEKIDETAKVDQSESEQNVRQETNGSCKFSVGEEVPPQNSENSSTSLESEQRNSTDTTISDSEISKPQEHIPEKIDETARVDQSESEKNIRQESNGSCEFSVGEEVSPQNSENSSTSLDSSRHERPPETQFFEKFQSGVYALLTLRADGIKIFKRVKFSKRRFTDTQAEEWWRQNKGRVLRKYCPVHQNNNGSCNITPNVKENIESLPS* 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0835 1045 MobiDBLite consensus disorder prediction 563 594 - -
Mtr4g0835 1045 CDD FYVE_like_SF 420 472 - -
Mtr4g0835 1045 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 192 243 IPR000408 -
Mtr4g0835 1045 SUPERFAMILY FYVE/PHD zinc finger 412 477 IPR011011 -
Mtr4g0835 1045 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 254 305 IPR000408 -
Mtr4g0835 1045 SUPERFAMILY RCC1/BLIP-II 33 411 IPR009091 -
Mtr4g0835 1045 Coils Coil 603 644 - -
Mtr4g0835 1045 MobiDBLite consensus disorder prediction 807 963 - -
Mtr4g0835 1045 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 137 191 IPR000408 -
Mtr4g0835 1045 MobiDBLite consensus disorder prediction 828 852 - -
Mtr4g0835 1045 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 230 240 IPR000408 -
Mtr4g0835 1045 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 414 476 IPR017455 -
Mtr4g0835 1045 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 358 409 IPR000408 -
Mtr4g0835 1045 ProSiteProfiles BRX domain profile. 965 1020 IPR013591 -
Mtr4g0835 1045 Gene3D - 6 251 IPR009091 -
Mtr4g0835 1045 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 85 136 IPR000408 -
Mtr4g0835 1045 MobiDBLite consensus disorder prediction 11 28 - -
Mtr4g0835 1045 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 412 487 IPR013083 -
Mtr4g0835 1045 SMART fyve_4 408 477 IPR000306 GO:0046872
Mtr4g0835 1045 PRINTS Chromosome condensation regulator RCC1 signature 87 103 IPR000408 -
Mtr4g0835 1045 PRINTS Chromosome condensation regulator RCC1 signature 137 153 IPR000408 -
Mtr4g0835 1045 PRINTS Chromosome condensation regulator RCC1 signature 178 194 IPR000408 -
Mtr4g0835 1045 PRINTS Chromosome condensation regulator RCC1 signature 194 208 IPR000408 -
Mtr4g0835 1045 PRINTS Chromosome condensation regulator RCC1 signature 295 313 IPR000408 -
Mtr4g0835 1045 PRINTS Chromosome condensation regulator RCC1 signature 353 374 IPR000408 -
Mtr4g0835 1045 MobiDBLite consensus disorder prediction 1 30 - -
Mtr4g0835 1045 MobiDBLite consensus disorder prediction 563 601 - -
Mtr4g0835 1045 MobiDBLite consensus disorder prediction 813 827 - -
Mtr4g0835 1045 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1 1025 - -
Mtr4g0835 1045 MobiDBLite consensus disorder prediction 902 925 - -
Mtr4g0835 1045 Pfam Transcription factor regulating root and shoot growth via Pin3 965 1019 IPR013591 -
Mtr4g0835 1045 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 306 357 IPR000408 -
Mtr4g0835 1045 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 1 1025 - -
Mtr4g0835 1045 Pfam Regulator of chromosome condensation (RCC1) repeat 359 405 IPR000408 -
Mtr4g0835 1045 Pfam Regulator of chromosome condensation (RCC1) repeat 305 354 IPR000408 -
Mtr4g0835 1045 Pfam Regulator of chromosome condensation (RCC1) repeat 191 240 IPR000408 -
Mtr4g0835 1045 Pfam Regulator of chromosome condensation (RCC1) repeat 256 302 IPR000408 -
Mtr4g0835 1045 Pfam Regulator of chromosome condensation (RCC1) repeat 84 133 IPR000408 -
Mtr4g0835 1045 Pfam Regulator of chromosome condensation (RCC1) repeat 140 187 IPR000408 -
Mtr4g0835 1045 Gene3D - 252 411 IPR009091 -
Mtr4g0835 1045 Pfam FYVE zinc finger 413 475 IPR000306 GO:0046872
Mtr4g0835 1045 MobiDBLite consensus disorder prediction 926 953 - -
Mtr4g0835 1045 MobiDBLite consensus disorder prediction 853 901 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0835 Mtr-Chr4 10727599 10736125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0835 964 1019 Major Intrinsic Protein MIP AT1G31880 33.929 7.29e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0835 - - mtr:MTR_4g029410 2047.32