Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0816 ATGAAAAGTCATCACCATCATCTTCTTCTTCATGCTTCATTTTCTTCTAATAATTCTTTCATACCCTTAAGTTCTTCCAATCATCAATTACCAAAAAATATGGCAATATCACCTCAAACATTCCCAACTACTAAACCACCATCATCAGAAACGTCGTCGTTTATTACCCCAAATATCACTAACTTTAACCTCCTCCATTCTCTTTTACACCTCACAAACCAAATATGTTCCTTAAACGCAGCTCCATGGTGTCGTTTCCTTTTAAACAAAATTTCTTCTTCCACTATACGTAAAACGCACCTTCTCGGTGTCGTTTTCGATGACCTAATTCGCAATTCAGTTTCATCTTCGAATTCAACTCGTCAAAATTCTTATGTTCTTTGTCTTGAAGAAATGTATATTGTGCTTCATAGGGTTAAAACTCTGCTTGAAGATTGTTCTAATGGAAGCAAATTTTCAATTCTCATGCAGATTGAAACTGTTGCTGATAATTTCAACAAATTAACAGGTGAATTATCAACTCTTCTTGATGTTTTTCCAATTCAAGAAATGAACTTGAACGATGATGTATTGGAGCTTGTTGTTCTGATTAGAAAACAGTGTTCAGAAACGAAGAATTTGTTAGGTGAAGAACAAATTCATCTCAGAAACGACGTTGTTTCTGTTCTTGAAGGAATCAAGAGAGAAATTGTTCCAAAAGAGGAGAAATTATCTTCAATTTTTGAGAAATTGGAGATTCAAGATTCTTCAAGTTGTAGAAATGAGATTGAAAATCTTCAGGAAGAAATTCAGAATCGGAACGAAGAACAATCAAAATCGGAGATTGTTGCGTTGATCGGACTGGTTCGTTATGCGAAGTGCGTTCTTTTTGGTGCTTCGACGCCGTCATCGGGAAATGATGGCCGTCTACGGCGGAATCAGTCGATGGAGGTGGTGGTTCCGGCGGATTACCGGTGTCCGATAAGTCTTGAACTGATGCGGGAGCCTGTCGTCGTGGCAACAGGACAGACGTACGATCGTTGTTCTATTAAGCTTTGGATGGATTCTGGACACAACACGTGTCCTAAAACAGGTCAAACCCTGGCCCACATGGAGTTAATACCTAACCATGCTTTGAGAAATATGATAGCTATTTGGTGCAAAGAACAGAAAATTCCGTTTGAAAGTGAAACGGTTGCCGTTAAAGTTAACGGTGGTGTTACAAATAAGACAGCTTTGGAAGCAACAAGAATGACGGCAGCGTTTTTAGTCAACAAGTTGACTTTGACTAACGGTTCTTTAGCGTCGATGGAAGAGACAAATGGTGTCGTTTATGAGCTTCGGGTTTTGGCAAAATCAGATTCGGAGAGTCGAGCTTGTATAGCTGAAGCTGGAGCTATAGAGATTTTAGTTCAGTTTTTAAGCTATGAAGTTGGTTCGCAAAATCCGAGTTTACAAGTTAATGCAGTTACAACGATATTAAATCTCTCGATACTTGAAGCGAATAAGACAAGGATAATGGAGACTGAAGGTGTTTTAAGCGGTGTTGCAGAGGTTTTAAGATCGGGTGCGACGTGGGAGGCTAAAGCAAATGCGGCGGCTACTGTGTTTAGTTTAACTGGAGTGGTTGCTTTTAGAAAGCGGTTAGGTAGGAAGACACGTATCGTTAGTGGATTGATTGAGTTGGCGAAGAATGGGCCTGAGGGTGCGAAGAGGGATGCATTGGCAGCCATTTTGCATCTAGCAGCGGATAGGGAGACGGTGGCGAGGTTGGTAGAGAGTGGGGCGGTGGAGATGACAGCAGGGATTATGGCGGTAATGCCGGAGGAGGCAGTGACGATACTTGAAGCGGTGGTTAAGCGTGGAGGATTAGTTGCGGTTGCGGCGGCTTTTGTGGGGATTAAAAAACTGGGGACGGTGTTAAGGGAGGGATCAGAGAGGGCGAGGGAGAGCGCGGCCGCGACACTTGTGACAATGTGTAGGAAAGGTGGATCAGAGATTGTGGCGGAGCTTGCGGCGATTCATGGTGTGGAAAGGGTGATTTGGGAGTTAATGGCGGTGGGGAGTGTGAGAGGGAGGAGGAAGGCGGCGACATTGTTGAGGATTTTACGTCGGTGGGCGGCGGGTTTAGATGGTGGTGAAACGGAGGGATTTACATCAACAAACACTTTTGTTAGTACGTCAACTACCATGGTTGTTCCAACTACAACTTCATTAGCACAATAA 2205 0.429 MKSHHHHLLLHASFSSNNSFIPLSSSNHQLPKNMAISPQTFPTTKPPSSETSSFITPNITNFNLLHSLLHLTNQICSLNAAPWCRFLLNKISSSTIRKTHLLGVVFDDLIRNSVSSSNSTRQNSYVLCLEEMYIVLHRVKTLLEDCSNGSKFSILMQIETVADNFNKLTGELSTLLDVFPIQEMNLNDDVLELVVLIRKQCSETKNLLGEEQIHLRNDVVSVLEGIKREIVPKEEKLSSIFEKLEIQDSSSCRNEIENLQEEIQNRNEEQSKSEIVALIGLVRYAKCVLFGASTPSSGNDGRLRRNQSMEVVVPADYRCPISLELMREPVVVATGQTYDRCSIKLWMDSGHNTCPKTGQTLAHMELIPNHALRNMIAIWCKEQKIPFESETVAVKVNGGVTNKTALEATRMTAAFLVNKLTLTNGSLASMEETNGVVYELRVLAKSDSESRACIAEAGAIEILVQFLSYEVGSQNPSLQVNAVTTILNLSILEANKTRIMETEGVLSGVAEVLRSGATWEAKANAAATVFSLTGVVAFRKRLGRKTRIVSGLIELAKNGPEGAKRDALAAILHLAADRETVARLVESGAVEMTAGIMAVMPEEAVTILEAVVKRGGLVAVAAAFVGIKKLGTVLREGSERARESAAATLVTMCRKGGSEIVAELAAIHGVERVIWELMAVGSVRGRRKAATLLRILRRWAAGLDGGETEGFTSTNTFVSTSTTMVVPTTTSLAQ* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0816 734 Gene3D - 412 625 IPR011989 -
Mtr4g0816 734 SUPERFAMILY RING/U-box 309 386 - -
Mtr4g0816 734 Coils Coil 249 276 - -
Mtr4g0816 734 SMART Ubox_2 316 379 IPR003613 GO:0004842|GO:0016567
Mtr4g0816 734 SUPERFAMILY ARM repeat 436 696 IPR016024 -
Mtr4g0816 734 Pfam U-box domain 313 384 IPR003613 GO:0004842|GO:0016567
Mtr4g0816 734 SMART arm_5 447 491 IPR000225 GO:0005515
Mtr4g0816 734 PANTHER U BOX DOMAIN-CONTAINING 47 715 - -
Mtr4g0816 734 CDD RING-Ubox_PUB 317 359 IPR045210 -
Mtr4g0816 734 Pfam Armadillo/beta-catenin-like repeat 447 490 IPR000225 GO:0005515
Mtr4g0816 734 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 298 393 IPR013083 -
Mtr4g0816 734 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 47 715 - -
Mtr4g0816 734 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 458 504 IPR000225 GO:0005515
Mtr4g0816 734 ProSiteProfiles U-box domain profile. 312 386 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0816 Mtr-Chr4 10539090 10541727 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0816 53 732 U-box Gene Family AT5G01830 52.701 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0816 - - cam:101506886 1083.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g0816 4 10539090 10541727 Mtr4g0816 4 10539090 10541727 ECH