Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0812 ATGCCTTGGAAAAAGGTGAAACTTGCTTTCATTGCCAATGCTAGAAAAACAACATACAATAAAAGGCAGAAGGGTTTATTCAAGAAGGTTTATGAACTAAGCACTCTATGTGGAGTTGAAGCTTGTGCCATTGTCTATGGACCATATGAGCCTCAACCGAAGATCTGGCCATCACCACAGGGAGTCCAAACAGTGCTCTCAAAATTCAGAACAATGTCTGAGTGGGAGAAGAGCCAGAAAATGATGAACCAAGAGACTTATATGATACAAAGGGTTCTGAAGGCCAAAGAGAAACTGAAGACACAAAGGCATGAAAACTATGAGAAAGAGATGGTTATGCTCATGTTTCAATGTCTTTGTGAAGGCAAATTAATGCAGAATAATATCTCCTTGGTTGATTCAAAACATCTTTGTTGGTTGATTGACCAAAAATGGAAGGACGTTAGTAGAAGGTTGGCACCACCATTGACATCTAGGGATGAAAAAATGGCAATGATGGGTCATGGCTATGTTGGGATGACTATGAACAATGGTGACATCATGGAAAGTCAAATTTTCATGACGAGACAGTACCCTTTGGCGAGGTCGATCCTAGATTTTTGCCCAATCTGCTACTTTGATTAA 624 0.4006 MPWKKVKLAFIANARKTTYNKRQKGLFKKVYELSTLCGVEACAIVYGPYEPQPKIWPSPQGVQTVLSKFRTMSEWEKSQKMMNQETYMIQRVLKAKEKLKTQRHENYEKEMVMLMFQCLCEGKLMQNNISLVDSKHLCWLIDQKWKDVSRRLAPPLTSRDEKMAMMGHGYVGMTMNNGDIMESQIFMTRQYPLARSILDFCPICYFD* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0812 207 SUPERFAMILY SRF-like 5 92 IPR036879 GO:0003677|GO:0046983
Mtr4g0812 207 SMART madsneu2 1 58 IPR002100 GO:0003677|GO:0046983
Mtr4g0812 207 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 3 160 - -
Mtr4g0812 207 CDD MADS_SRF_like 4 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mtr4g0812 207 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 48 IPR002100 GO:0003677|GO:0046983
Mtr4g0812 207 ProSiteProfiles MADS-box domain profile. 15 47 IPR002100 GO:0003677|GO:0046983
Mtr4g0812 207 Gene3D - 12 113 IPR036879 GO:0003677|GO:0046983
Mtr4g0812 207 PANTHER MADS BOX PROTEIN 3 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0812 Mtr-Chr4 10463358 10464026 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0812 1 152 Type I MADS-box Gene Family AT5G48670 50.649 1.47e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr4g0812 SRF-TF 3.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0812 - - mtr:MTR_4g032620 285.419