Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0801 ATGGTGTTCACGATTTCCTCATTTGATGTTGCTAGCAACAGTGGTTCGTATCGACCATCACGCAATGAATACAAACTGAATTTCACAATCAACACAAAAGTCAAACTATCTAAAACTGTTTTGGTCCCAACAAACGTGTATTCGTTTACATCTGCATATGATGTTTTCAATGAATCTTACGACAACAACTTCTTGGTAGATGTAATTGGAGTCATGACTGGAGTTGGAGTTGAAAGAGAGTACGAAAGAGATGGTGTAAAAACTAAAATGAATGTCATTGAATTGGATTCAAATGGGTATCGTTTTAAATGTACTCTTTTTGGAGAGTATGTTGAAGAGCTGAGCTCTTTCCTATCGTCCGGTGAATCTCAAAATGTTGTTGTAGCCATTATGTTGGCAAAAGTTAAATTGTTTCAAGGTAATAATTTATGA 432 0.3542 MVFTISSFDVASNSGSYRPSRNEYKLNFTINTKVKLSKTVLVPTNVYSFTSAYDVFNESYDNNFLVDVIGVMTGVGVEREYERDGVKTKMNVIELDSNGYRFKCTLFGEYVEELSSFLSSGESQNVVVAIMLAKVKLFQGNNL* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0801 143 Gene3D - 42 143 IPR012340 -
Mtr4g0801 143 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 7 142 - -
Mtr4g0801 143 Pfam Domain of unknown function DUF223 2 65 IPR003871 -
Mtr4g0801 143 CDD RPA1_DBD_B_like 67 142 - -
Mtr4g0801 143 PANTHER REPLICATION FACTOR A 1, RFA1 7 142 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mtr4g0801 143 SUPERFAMILY Nucleic acid-binding proteins 47 142 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0801 Mtr-Chr4 10334699 10336014 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0801 15 143 Core DNA Replication Machinery Family AT4G19130 25.000 9.88e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0801 - - mtr:MTR_8g088810 245.743