Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0793 ATGCAAGATCAATTCATCATCCTATCTTTGTTTCTTGTTCTTTTTGGTCCACTCCAAGTGATCTCACAAAACCAACCTTTCAATGAAGATATGCTAGGGTTGATTGTGTTCAAAGCAGGTCTAGAAGATCCGAAAAACAAACTTTCTTCTTGGAATGAAGATGATTATAGTCCTTGCAATTGGGAAGGTGTTAAATGTGATCCTTCAACAAATAGGGTATCTTCTCTTGTTCTTGATGGATTCTCTCTTTCAGGACATATTGGTAAAAGCCTTATGAGATTACAGTTCCTTCAAATTCTTTCACTTTCTCGGAACAACTTCACGGGGAGAATAAACCATGATCTTCTTATTACACTTTGGAATCTAAAAGTTGTTGATTTGAGTGAAAACAATCTCGTTGGAACAATTCCGGATGAACTTTTTAAACAATGTTGGTCTCTTAGAGTTTTATCGTTCGCGAAAAACAATCTCACGGGTACGATTCCTGACTCTTTGAGTTCATGCTACTCGTTAGCAAGTTTGAACTTTTCTTCTAATCAACTGAAAGGTGAATTACATTATGGAATGTGGTTTCTGAAGGAACTTCAATCGCTTGATCTCTCGAATAACTTTCTTGAAGGAGAGATTCCGGAAGGAATTCAAAATCTATATGATTTGAGAGAGTTAAGGCTAGGGAGGAATTTTTTCATTGGTAAGATTCCCGAGAGCATAGGAAACTGTTTGCTTTTGAAGTTGATTGATTTCAGTGATAATCTTCTTACTGATGTAATTCCAGAGTCGATACAAAGACTCGCCTCATGCACATTACTAAGTTTGCAAGGGAATTATTTCAATGGGAGCATTCCACATTGGATTGGTGAATTGAACAATTTAGAGATATTGAAACTTTCTTCTAATAGATTTTATGGTCAAATTCCATTTGGCATTGGTGGTCTTAGAAGTTTGCAAGTTTTGAATTTTTCTGCAAACAATATTTCGGGTTCTATTCCAGTGAGTATAAGAGAGCTTAAATCTTTGTATACTCTTGATCTAAGTGATAACAAGCTTAATGGAAGCATTCCTTATGAAATAGAAGGAGCAATTTCACTTAGTGAGTTGAGGCTACAAAGGAATTTCTTAGGTGGAAGAATTCCAGTCCAAATTGGAAAATGTTCAGAACTAACATCTTTGAATCTTGCACACAACAAGCTTATTGGTTCAATCCCTACATCAATTGCAGACCTAACAAATCTTCAATATGCAGATTTATCATATAATAAACTCTCTGGAACATTACCTAAAAACCTCACAAATCTTACACATCTTTTCTCATTCAATGTTTCCTATAACAATCTTAAAGGTGAATTACCAATTGGTGGATTCTTCAACACAATCACTCCTTCATTTGTTCATGGAAATCCTTTATTATGTGGTTCTCTTGTTAATCACTCGTGCGATCAATCTTATCATCCAAAACCTATTGTTTTAAACCCTAATTCAAATTACAACAATTCAAGATCTTCCTTAAAAAACCATCATCATAAGATAATGCTAAGTGTTTCGGTCTTTATTGCTATCGGTGCAGCTATTTCTATTGTTGTCGGTATTGTTGCTGTTACTATTTTAAATATTCATGTTAGGTCTTCAATTTCACATTCTGGTGGTGAGGAATTTAGTTTTTCGCCTGAAAAAGATCCGAAATGCGGACAACTTGTGATGTTTAATGGTGATATTATTGAGTTTGCCGATGAGGCAAATGATCTTCTTAAAGAAGGTAATGAAATCGGTCGCGGTGGATTTGGAATTGTATATTGTGTTGTCCTTCGCGATCGGAAGTTTGTTGCAATTAAGAAGCTTATAGGTTCAAGTTTGACAAAGTCACAAGAAGATTTTGAGAGTGAGGTTCAAAAGCTTGGAAAAATTAGGCATCAAAATGTTGTGGCACTTGAAGGGTATTATTGGAATCCATCTTTTCAGCTTATTATCTATGAGCACTTTTCTAGAGGAAGTTTGCATAAGCTTCTACATGATGATCAAAGCAAAATTGTGTTTTCTTGGAGAGCAAGATTCAAGGTTATTTTAGGAATTGCAAAAGGGTTGGCCTATTTACATGAAATGGACATAATCCATTATAATATGAAATCTACTAATGTTTTCATTGATGTTTGTGATGAACCTAAAATAGGAGATTTTGGTTTGGTGAATCTTTTACCAATGCTAGACCATTGTGTTTTGAGCAGCAAAATTCAAAGTGCACTCGGATACACGGCTCCTGAATTCGCTTGCCGCACGGTTAACATAACCGAAAAATGCGACATATATGGTTTTGGAATATTGGTTCTTGAAATTGTGAGTGGAAAAAGACCTGTGGAATATATGGAGGATGATGTTATTGTTCTATGTGACATGGTGAGGAGTGAATTGGGGGATGGAAAAGTCGAGCAATGCATTGATGAGAAGCTCATTGGTAAATTTTCGCTCGAGGAAGTGACTCCTGTGATAAAATTGGGACTGGTTTGTGCATCACAAGTACCGTCGAATCGTCCCGATATGGCGGAGGTTGTTAACATATTAGAGATGATTCAATGCTCTTCAGAAGGACAACAAGAGGAATTAAAATGA 2601 0.3583 MQDQFIILSLFLVLFGPLQVISQNQPFNEDMLGLIVFKAGLEDPKNKLSSWNEDDYSPCNWEGVKCDPSTNRVSSLVLDGFSLSGHIGKSLMRLQFLQILSLSRNNFTGRINHDLLITLWNLKVVDLSENNLVGTIPDELFKQCWSLRVLSFAKNNLTGTIPDSLSSCYSLASLNFSSNQLKGELHYGMWFLKELQSLDLSNNFLEGEIPEGIQNLYDLRELRLGRNFFIGKIPESIGNCLLLKLIDFSDNLLTDVIPESIQRLASCTLLSLQGNYFNGSIPHWIGELNNLEILKLSSNRFYGQIPFGIGGLRSLQVLNFSANNISGSIPVSIRELKSLYTLDLSDNKLNGSIPYEIEGAISLSELRLQRNFLGGRIPVQIGKCSELTSLNLAHNKLIGSIPTSIADLTNLQYADLSYNKLSGTLPKNLTNLTHLFSFNVSYNNLKGELPIGGFFNTITPSFVHGNPLLCGSLVNHSCDQSYHPKPIVLNPNSNYNNSRSSLKNHHHKIMLSVSVFIAIGAAISIVVGIVAVTILNIHVRSSISHSGGEEFSFSPEKDPKCGQLVMFNGDIIEFADEANDLLKEGNEIGRGGFGIVYCVVLRDRKFVAIKKLIGSSLTKSQEDFESEVQKLGKIRHQNVVALEGYYWNPSFQLIIYEHFSRGSLHKLLHDDQSKIVFSWRARFKVILGIAKGLAYLHEMDIIHYNMKSTNVFIDVCDEPKIGDFGLVNLLPMLDHCVLSSKIQSALGYTAPEFACRTVNITEKCDIYGFGILVLEIVSGKRPVEYMEDDVIVLCDMVRSELGDGKVEQCIDEKLIGKFSLEEVTPVIKLGLVCASQVPSNRPDMAEVVNILEMIQCSSEGQQEELK* 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0793 866 Gene3D Ribonuclease Inhibitor 243 485 IPR032675 -
Mtr4g0793 866 SMART LRR_typ_2 288 312 IPR003591 -
Mtr4g0793 866 SMART LRR_typ_2 336 360 IPR003591 -
Mtr4g0793 866 SMART LRR_typ_2 119 143 IPR003591 -
Mtr4g0793 866 SMART LRR_typ_2 216 240 IPR003591 -
Mtr4g0793 866 SMART LRR_typ_2 192 215 IPR003591 -
Mtr4g0793 866 SMART LRR_typ_2 408 432 IPR003591 -
Mtr4g0793 866 ProSitePatterns Protein kinases ATP-binding region signature. 588 611 IPR017441 GO:0005524
Mtr4g0793 866 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 1 297 - -
Mtr4g0793 866 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 291 856 - -
Mtr4g0793 866 SUPERFAMILY Protein kinase-like (PK-like) 579 856 IPR011009 -
Mtr4g0793 866 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Mtr4g0793 866 SUPERFAMILY L domain-like 215 471 - -
Mtr4g0793 866 PANTHER LEUCINE-RICH RECEPTOR-LIKE KINASE FAMILY PROTEIN 291 856 - -
Mtr4g0793 866 PANTHER LEUCINE-RICH RECEPTOR-LIKE KINASE FAMILY PROTEIN 1 297 - -
Mtr4g0793 866 Gene3D Transferase(Phosphotransferase) domain 1 659 866 - -
Mtr4g0793 866 Pfam Protein kinase domain 584 847 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g0793 866 Pfam Leucine Rich Repeat 195 216 IPR001611 GO:0005515
Mtr4g0793 866 Pfam Leucine Rich Repeat 219 240 IPR001611 GO:0005515
Mtr4g0793 866 Gene3D Phosphorylase Kinase; domain 1 556 658 - -
Mtr4g0793 866 Gene3D Ribonuclease Inhibitor 27 185 IPR032675 -
Mtr4g0793 866 Gene3D Ribonuclease Inhibitor 186 242 IPR032675 -
Mtr4g0793 866 Pfam Leucine rich repeat 290 349 IPR001611 GO:0005515
Mtr4g0793 866 Pfam Leucine rich repeat 362 421 IPR001611 GO:0005515
Mtr4g0793 866 Pfam Leucine rich repeat 121 181 IPR001611 GO:0005515
Mtr4g0793 866 PRINTS Leucine-rich repeat signature 195 208 - -
Mtr4g0793 866 PRINTS Leucine-rich repeat signature 336 349 - -
Mtr4g0793 866 SUPERFAMILY L domain-like 50 280 - -
Mtr4g0793 866 ProSiteProfiles Protein kinase domain profile. 582 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0793 Mtr-Chr4 10245159 10250843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0793 11 859 Receptor kinase-like Gene Family AT5G01890 50.208 0.0 855
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Mtr4g0793 Pkinase 2.7e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0793 - - gmx:100813535 987.638
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g0793 4 10245159 10250843 Mtr4g0793 4 10245159 10250843 ECH
Mtr7g1803 7 34061288 34065476 Mtr4g0793 4 10245159 10250843 PCT